Strain Fitness in Pseudomonas putida KT2440 around PP_0114

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 2
117,852	+		PP_0112	0.70	-0.1
117,853	-		PP_0112	0.70	+0.3
117,918	+		PP_0112	0.78	-0.2
117,919	-		PP_0112	0.78	+0.1
117,919	-		PP_0112	0.78	-0.9
117,947	+		PP_0112	0.82	+0.0
118,022	-				+0.2
118,150	+				-0.0
118,150	+				+0.0
118,151	-				+0.3
118,151	-				-0.2
118,154	+				-0.6
118,209	+				-1.1
118,209	+				+0.1
118,221	+		PP_0113	0.11	-0.5
118,221	+		PP_0113	0.11	+0.2
118,221	+		PP_0113	0.11	-0.8
118,233	+		PP_0113	0.12	-1.2
118,234	-		PP_0113	0.13	+0.5
118,324	+		PP_0113	0.26	-0.1
118,354	-		PP_0113	0.31	-1.4
118,512	+		PP_0113	0.54	-0.9
118,551	-		PP_0113	0.60	-0.1
118,645	+		PP_0113	0.74	+0.1
118,645	+		PP_0113	0.74	+0.0
118,645	+		PP_0113	0.74	+0.0
118,646	-		PP_0113	0.74	-0.1
118,646	-		PP_0113	0.74	-0.6
118,716	+		PP_0113	0.84	+0.7
118,716	+		PP_0113	0.84	+0.4
118,837	+				+0.2
118,837	+				-0.2
118,837	+				+0.5
118,837	+				+0.5
118,837	+				-0.4
118,837	+				+0.4
118,837	+				-0.8
118,837	+				+0.2
118,838	-				+0.1
118,838	-				-0.8
118,838	-				-0.9
118,838	-				-1.1
118,838	-				-0.1
118,838	-				-0.5
118,838	-				-0.0
118,841	+				-0.5
118,841	+				-0.4
118,841	+				+0.3
118,841	+				+2.1
118,842	-				+0.1
118,842	-				+0.5
118,842	-				-0.5
118,842	-				+0.5
118,842	-				+0.2
118,939	+		PP_0114	0.12	-0.7
118,959	+		PP_0114	0.14	-0.6
118,959	+		PP_0114	0.14	+0.1
118,959	+		PP_0114	0.14	-0.4
118,960	-		PP_0114	0.14	-0.7
118,960	-		PP_0114	0.14	-0.3
119,004	+		PP_0114	0.18	+0.1
119,004	+		PP_0114	0.18	-0.3
119,004	+		PP_0114	0.18	-0.3
119,005	-		PP_0114	0.18	-0.4
119,005	-		PP_0114	0.18	-0.6
119,005	-		PP_0114	0.18	+0.4
119,005	-		PP_0114	0.18	+0.3
119,033	+		PP_0114	0.21	+0.0
119,336	+		PP_0114	0.51	-0.0
119,336	+		PP_0114	0.51	+0.1
119,336	+		PP_0114	0.51	-0.5
119,337	-		PP_0114	0.51	+1.7
119,453	+		PP_0114	0.63	+1.2
119,797	-				+0.6
119,803	+				+0.4
119,803	+				+0.3
119,803	+				+0.3
119,803	+				-0.3
119,803	+				-0.4
119,804	-				+0.6
119,804	-				-1.7
119,804	-				+0.4
119,804	-				+0.2
119,808	-				-0.7
119,808	-				+1.0
119,808	-				+0.4
119,830	-				-0.1
119,902	+				+0.2
119,903	-				-0.4
119,903	-				+0.5
119,919	+				-0.5
119,948	+				-0.5
119,948	+				-0.3
119,948	+				-0.1
120,001	+				-0.5
120,001	+				+0.0
120,002	-				+0.6
120,032	-				+0.1
120,367	+		PP_0115	0.15	-0.1
120,368	-		PP_0115	0.15	-0.5
120,515	-		PP_0115	0.22	+1.2
120,552	+		PP_0115	0.23	-0.7
120,552	+		PP_0115	0.23	-0.2
120,552	+		PP_0115	0.23	-0.5
120,552	+		PP_0115	0.23	+0.8
120,553	-		PP_0115	0.23	+0.5
120,553	-		PP_0115	0.23	+0.3
120,699	+		PP_0115	0.30	-0.9
120,700	-		PP_0115	0.30	-0.5
120,700	-		PP_0115	0.30	-0.1
120,700	-		PP_0115	0.30	+0.0
120,771	+		PP_0115	0.34	+0.2
120,771	+		PP_0115	0.34	-0.1
120,771	+		PP_0115	0.34	-0.5