Strain Fitness in Pseudomonas putida KT2440 around PP_5196

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 1
5,927,078	-		PP_5195	0.50	-0.1
5,927,143	+		PP_5195	0.54	+0.1
5,927,143	+		PP_5195	0.54	-0.2
5,927,215	+		PP_5195	0.58	+0.2
5,927,227	+		PP_5195	0.59	-0.2
5,927,227	+		PP_5195	0.59	-0.0
5,927,227	+		PP_5195	0.59	-0.2
5,927,228	-		PP_5195	0.59	+0.6
5,927,228	-		PP_5195	0.59	+0.9
5,927,340	+		PP_5195	0.66	+0.0
5,927,340	+		PP_5195	0.66	-0.1
5,927,382	+		PP_5195	0.68	-0.4
5,927,383	-		PP_5195	0.68	+0.0
5,927,443	+		PP_5195	0.72	-0.4
5,927,444	-		PP_5195	0.72	+0.2
5,927,444	-		PP_5195	0.72	-0.3
5,927,444	-		PP_5195	0.72	+0.1
5,927,444	-		PP_5195	0.72	-0.0
5,927,444	-		PP_5195	0.72	+0.1
5,927,449	+		PP_5195	0.73	-0.6
5,927,449	+		PP_5195	0.73	-0.5
5,927,449	+		PP_5195	0.73	-0.6
5,927,449	+		PP_5195	0.73	-0.2
5,927,449	+		PP_5195	0.73	-0.3
5,927,450	-		PP_5195	0.73	+0.3
5,927,450	-		PP_5195	0.73	+0.2
5,927,455	+		PP_5195	0.73	+0.0
5,927,455	+		PP_5195	0.73	+0.1
5,927,455	+		PP_5195	0.73	-0.3
5,927,456	-		PP_5195	0.73	+0.4
5,927,596	+		PP_5195	0.82	+0.1
5,927,596	+		PP_5195	0.82	+0.0
5,927,736	-				+1.2
5,927,736	-				+0.1
5,927,866	+				-1.6
5,927,866	+				+0.2
5,927,955	+				-0.1
5,927,987	+				+0.3
5,927,988	-				-0.5
5,927,988	-				+1.0
5,928,048	+				+0.9
5,928,049	-				+0.4
5,928,049	-				+0.1
5,928,049	-				+0.1
5,928,054	+				-0.0
5,928,054	+				-0.0
5,928,200	-		PP_5196	0.15	-0.2
5,928,200	-		PP_5196	0.15	-0.7
5,928,200	-		PP_5196	0.15	-0.3
5,928,387	+		PP_5196	0.34	+0.2
5,928,387	+		PP_5196	0.34	+0.4
5,928,388	-		PP_5196	0.34	-0.3
5,928,390	+		PP_5196	0.34	+0.9
5,928,390	+		PP_5196	0.34	-0.1
5,928,390	+		PP_5196	0.34	+0.2
5,928,391	-		PP_5196	0.34	-0.1
5,928,391	-		PP_5196	0.34	+0.2
5,928,558	+		PP_5196	0.51	+0.1
5,928,558	+		PP_5196	0.51	-0.1
5,928,622	-		PP_5196	0.57	-0.1
5,928,622	-		PP_5196	0.57	-0.5
5,928,622	-		PP_5196	0.57	+0.1
5,928,622	-		PP_5196	0.57	+0.5
5,928,622	-		PP_5196	0.57	-0.7
5,928,660	+		PP_5196	0.61	+0.0
5,928,660	+		PP_5196	0.61	-0.4
5,928,661	-		PP_5196	0.61	-0.1
5,928,661	-		PP_5196	0.61	-0.0
5,928,661	-		PP_5196	0.61	-0.8
5,928,918	+		PP_5196	0.87	+0.4
5,928,918	+		PP_5196	0.87	+0.0
5,928,918	+		PP_5196	0.87	-0.8
5,928,918	+		PP_5196	0.87	-0.1
5,928,918	+		PP_5196	0.87	-0.3
5,928,918	+		PP_5196	0.87	+0.2
5,928,919	-		PP_5196	0.87	-0.1
5,928,919	-		PP_5196	0.87	-0.2
5,928,919	-		PP_5196	0.87	-0.6
5,928,919	-		PP_5196	0.87	+0.2
5,928,963	+				+0.0
5,928,963	+				-0.3
5,928,964	-				+0.0
5,929,068	+				-0.3
5,929,112	+				-0.2
5,929,112	+				-0.0
5,929,112	+				+0.4
5,929,112	+				+0.0
5,929,112	+				-0.2
5,929,113	-				+0.3
5,929,113	-				-0.2
5,929,113	-				-0.1
5,929,116	+				+0.1
5,929,116	+				-0.8
5,929,117	-				-0.7
5,929,146	+				+0.5
5,929,146	+				-0.4
5,929,146	+				-0.1
5,929,147	-				+0.6