Strain Fitness in Pseudomonas putida KT2440 around PP_4943

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
5,623,745	-				+0.5
5,623,745	-				+0.1
5,623,775	+				-0.7
5,623,775	+				-0.3
5,623,776	-				-1.0
5,623,776	-				+0.5
5,623,777	+				-0.6
5,623,777	+				-0.4
5,623,921	+		PP_4942	0.21	-0.8
5,624,046	-		PP_4942	0.35	+0.8
5,624,098	+		PP_4942	0.41	-1.0
5,624,098	+		PP_4942	0.41	-1.2
5,624,098	+		PP_4942	0.41	-2.2
5,624,099	-		PP_4942	0.41	-1.7
5,624,142	+		PP_4942	0.45	-0.5
5,624,585	+				-2.3
5,624,618	+				-1.7
5,624,962	-		PP_4943	0.29	+0.4
5,625,262	-		PP_4943	0.56	+0.1
5,625,457	-		PP_4943	0.73	+0.0
5,625,639	-		PP_4943	0.89	+0.8
5,625,809	-				-1.2
5,625,944	-		PP_4944	0.11	+0.5
5,625,959	-		PP_4944	0.12	+0.3
5,626,598	-		PP_4944	0.49	+0.0
5,626,664	-		PP_4944	0.52	-0.5
5,626,664	-		PP_4944	0.52	-1.5
5,626,664	-		PP_4944	0.52	-0.8
5,626,730	-		PP_4944	0.56	-0.8
5,626,730	-		PP_4944	0.56	-0.6
5,626,730	-		PP_4944	0.56	-2.5