Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4830 and PP_4831 overlap by 8 nucleotides PP_4831 and PP_4832 overlap by 4 nucleotides PP_4832 and PP_4833 are separated by 134 nucleotides
PP_4830: PP_4830 - precorrin-6Y C(5,15)-methyltransferase, at 5,496,928 to 5,498,139
_4830
PP_4831: PP_4831 - putative cobalt-precorrin-6A synthase, at 5,498,132 to 5,499,226
_4831
PP_4832: PP_4832 - Precorrin-6x reductase, at 5,499,223 to 5,499,942
_4832
PP_4833: PP_4833 - SURF1 domain protein, at 5,500,077 to 5,500,508
_4833
Position (kb) 5498
5499
5500 Strain fitness (log2 ratio) -2
-1
0
1 at 5497.160 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.161 kb on + strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.162 kb on - strand, within PP_4830 at 5497.169 kb on - strand, within PP_4830 at 5497.549 kb on - strand, within PP_4830 at 5497.601 kb on - strand, within PP_4830 at 5497.817 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5497.919 kb on + strand, within PP_4830 at 5498.118 kb on - strand at 5498.119 kb on - strand at 5498.179 kb on + strand at 5498.179 kb on + strand at 5498.180 kb on - strand at 5498.180 kb on - strand at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.390 kb on + strand, within PP_4831 at 5498.391 kb on - strand, within PP_4831 at 5498.392 kb on + strand, within PP_4831 at 5498.705 kb on + strand, within PP_4831 at 5498.706 kb on - strand, within PP_4831 at 5498.706 kb on - strand, within PP_4831 at 5498.753 kb on + strand, within PP_4831 at 5498.754 kb on - strand, within PP_4831 at 5498.763 kb on + strand, within PP_4831 at 5498.764 kb on - strand, within PP_4831 at 5498.764 kb on - strand, within PP_4831 at 5498.811 kb on - strand, within PP_4831 at 5499.302 kb on - strand, within PP_4832 at 5499.302 kb on - strand, within PP_4832 at 5499.302 kb on - strand, within PP_4832 at 5499.302 kb on - strand, within PP_4832 at 5499.391 kb on + strand, within PP_4832 at 5499.439 kb on + strand, within PP_4832 at 5499.440 kb on - strand, within PP_4832 at 5499.440 kb on - strand, within PP_4832 at 5499.440 kb on - strand, within PP_4832 at 5499.940 kb on + strand at 5499.974 kb on + strand at 5499.974 kb on + strand at 5499.974 kb on + strand at 5500.035 kb on - strand at 5500.071 kb on - strand at 5500.151 kb on - strand, within PP_4833 at 5500.151 kb on - strand, within PP_4833 at 5500.187 kb on + strand, within PP_4833 at 5500.187 kb on + strand, within PP_4833 at 5500.187 kb on + strand, within PP_4833
Per-strain Table
Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1 remove 5,497,160 + PP_4830 0.19 +0.5 5,497,161 + PP_4830 0.19 -0.2 5,497,161 + PP_4830 0.19 -0.6 5,497,161 + PP_4830 0.19 +0.0 5,497,162 - PP_4830 0.19 +0.2 5,497,162 - PP_4830 0.19 +0.0 5,497,162 - PP_4830 0.19 -2.3 5,497,162 - PP_4830 0.19 +0.1 5,497,169 - PP_4830 0.20 -0.4 5,497,549 - PP_4830 0.51 +0.1 5,497,601 - PP_4830 0.56 -0.3 5,497,817 + PP_4830 0.73 -0.1 5,497,919 + PP_4830 0.82 +0.0 5,497,919 + PP_4830 0.82 +0.3 5,497,919 + PP_4830 0.82 -0.0 5,497,919 + PP_4830 0.82 -0.3 5,498,118 - -0.7 5,498,119 - -0.5 5,498,179 + -0.6 5,498,179 + -0.1 5,498,180 - +0.0 5,498,180 - -1.1 5,498,390 + PP_4831 0.24 +0.7 5,498,390 + PP_4831 0.24 -2.1 5,498,390 + PP_4831 0.24 +0.5 5,498,390 + PP_4831 0.24 +0.6 5,498,391 - PP_4831 0.24 +0.8 5,498,392 + PP_4831 0.24 -0.2 5,498,705 + PP_4831 0.52 -0.0 5,498,706 - PP_4831 0.52 +0.1 5,498,706 - PP_4831 0.52 -0.3 5,498,753 + PP_4831 0.57 -0.1 5,498,754 - PP_4831 0.57 +0.1 5,498,763 + PP_4831 0.58 -0.5 5,498,764 - PP_4831 0.58 -0.2 5,498,764 - PP_4831 0.58 +0.0 5,498,811 - PP_4831 0.62 -1.0 5,499,302 - PP_4832 0.11 -0.1 5,499,302 - PP_4832 0.11 +0.8 5,499,302 - PP_4832 0.11 -0.2 5,499,302 - PP_4832 0.11 +0.3 5,499,391 + PP_4832 0.23 -0.2 5,499,439 + PP_4832 0.30 -0.3 5,499,440 - PP_4832 0.30 -0.1 5,499,440 - PP_4832 0.30 +0.1 5,499,440 - PP_4832 0.30 -0.5 5,499,940 + -0.2 5,499,974 + +0.4 5,499,974 + +0.1 5,499,974 + +0.6 5,500,035 - -0.1 5,500,071 - +0.3 5,500,151 - PP_4833 0.17 -0.2 5,500,151 - PP_4833 0.17 +0.3 5,500,187 + PP_4833 0.25 +0.2 5,500,187 + PP_4833 0.25 -0.2 5,500,187 + PP_4833 0.25 -0.0
Or see this region's nucleotide sequence