Strain Fitness in Pseudomonas putida KT2440 around PP_4611

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4610 and PP_5699 overlap by 4 nucleotidesPP_5699 and PP_4611 are separated by 139 nucleotidesPP_4611 and PP_4612 overlap by 4 nucleotides PP_4610: PP_4610 - conserved protein of unknown function containing PepSY-associated TM helix domain, at 5,231,118 to 5,232,695 _4610 PP_5699: PP_5699 - putative iron uptake protein, at 5,232,692 to 5,232,997 _5699 PP_4611: PP_4611 - RNA polymerase sigma-70 factor, ECF subfamily, at 5,233,137 to 5,233,649 _4611 PP_4612: PP_4612 - putative FecR protein, at 5,233,646 to 5,234,572 _4612 Position (kb) 5233 5234Strain fitness (log2 ratio) -1 0 1at 5232.215 kb on + strand, within PP_4610at 5232.216 kb on - strand, within PP_4610at 5232.317 kb on - strand, within PP_4610at 5232.502 kb on + strand, within PP_4610at 5232.503 kb on - strand, within PP_4610at 5232.524 kb on + strand, within PP_4610at 5232.525 kb on - strand, within PP_4610at 5232.816 kb on + strand, within PP_5699at 5232.886 kb on + strand, within PP_5699at 5232.886 kb on + strand, within PP_5699at 5232.887 kb on - strand, within PP_5699at 5232.887 kb on - strand, within PP_5699at 5232.887 kb on - strand, within PP_5699at 5232.887 kb on - strand, within PP_5699at 5232.915 kb on + strand, within PP_5699at 5232.916 kb on - strand, within PP_5699at 5232.964 kb on - strand, within PP_5699at 5233.148 kb on + strandat 5233.148 kb on + strandat 5233.149 kb on - strandat 5233.169 kb on + strandat 5233.169 kb on + strandat 5233.170 kb on - strandat 5233.191 kb on + strand, within PP_4611at 5233.278 kb on + strand, within PP_4611at 5233.278 kb on + strand, within PP_4611at 5233.278 kb on + strand, within PP_4611at 5233.278 kb on + strand, within PP_4611at 5233.278 kb on + strand, within PP_4611at 5233.279 kb on - strand, within PP_4611at 5233.279 kb on - strand, within PP_4611at 5233.279 kb on - strand, within PP_4611at 5233.279 kb on - strand, within PP_4611at 5233.279 kb on - strand, within PP_4611at 5233.279 kb on - strand, within PP_4611at 5233.357 kb on + strand, within PP_4611at 5233.358 kb on - strand, within PP_4611at 5233.365 kb on - strand, within PP_4611at 5233.398 kb on + strand, within PP_4611at 5233.477 kb on + strand, within PP_4611at 5233.478 kb on - strand, within PP_4611at 5233.587 kb on + strand, within PP_4611at 5234.145 kb on + strand, within PP_4612at 5234.145 kb on + strand, within PP_4612at 5234.145 kb on + strand, within PP_4612at 5234.145 kb on + strandat 5234.145 kb on + strand, within PP_4612at 5234.145 kb on + strand, within PP_4612at 5234.146 kb on - strand, within PP_4612at 5234.149 kb on + strand, within PP_4612at 5234.149 kb on + strand, within PP_4612at 5234.149 kb on + strand, within PP_4612at 5234.150 kb on - strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.163 kb on + strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.164 kb on - strand, within PP_4612at 5234.168 kb on + strand, within PP_4612at 5234.168 kb on + strand, within PP_4612at 5234.169 kb on - strand, within PP_4612at 5234.169 kb on - strand, within PP_4612at 5234.169 kb on - strand, within PP_4612at 5234.193 kb on + strand, within PP_4612at 5234.210 kb on + strand, within PP_4612at 5234.211 kb on - strand, within PP_4612at 5234.211 kb on - strand, within PP_4612at 5234.212 kb on + strand, within PP_4612at 5234.213 kb on - strand, within PP_4612at 5234.463 kb on - strand, within PP_4612at 5234.571 kb on - strandat 5234.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1
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5,232,215 + PP_4610 0.70 +0.2
5,232,216 - PP_4610 0.70 +0.6
5,232,317 - PP_4610 0.76 +0.4
5,232,502 + PP_4610 0.88 -0.2
5,232,503 - PP_4610 0.88 +0.5
5,232,524 + PP_4610 0.89 -0.1
5,232,525 - PP_4610 0.89 +0.2
5,232,816 + PP_5699 0.41 +0.1
5,232,886 + PP_5699 0.63 -0.2
5,232,886 + PP_5699 0.63 +0.4
5,232,887 - PP_5699 0.64 -0.4
5,232,887 - PP_5699 0.64 -0.0
5,232,887 - PP_5699 0.64 -0.1
5,232,887 - PP_5699 0.64 -0.5
5,232,915 + PP_5699 0.73 +0.4
5,232,916 - PP_5699 0.73 -0.2
5,232,964 - PP_5699 0.89 +0.5
5,233,148 + -0.3
5,233,148 + -0.4
5,233,149 - +0.1
5,233,169 + -0.5
5,233,169 + +0.4
5,233,170 - +0.1
5,233,191 + PP_4611 0.11 -0.8
5,233,278 + PP_4611 0.27 -0.3
5,233,278 + PP_4611 0.27 -0.4
5,233,278 + PP_4611 0.27 -0.2
5,233,278 + PP_4611 0.27 -0.1
5,233,278 + PP_4611 0.27 +0.2
5,233,279 - PP_4611 0.28 +0.3
5,233,279 - PP_4611 0.28 -0.3
5,233,279 - PP_4611 0.28 +0.4
5,233,279 - PP_4611 0.28 +0.4
5,233,279 - PP_4611 0.28 +0.2
5,233,279 - PP_4611 0.28 -0.1
5,233,357 + PP_4611 0.43 -0.1
5,233,358 - PP_4611 0.43 +0.3
5,233,365 - PP_4611 0.44 +0.2
5,233,398 + PP_4611 0.51 -0.0
5,233,477 + PP_4611 0.66 -0.1
5,233,478 - PP_4611 0.66 +1.2
5,233,587 + PP_4611 0.88 +0.0
5,234,145 + PP_4612 0.54 -0.5
5,234,145 + PP_4612 0.54 +0.5
5,234,145 + PP_4612 0.54 -0.5
5,234,145 + +1.1
5,234,145 + PP_4612 0.54 -0.7
5,234,145 + PP_4612 0.54 -0.0
5,234,146 - PP_4612 0.54 +1.0
5,234,149 + PP_4612 0.54 -0.6
5,234,149 + PP_4612 0.54 +0.1
5,234,149 + PP_4612 0.54 -0.3
5,234,150 - PP_4612 0.54 -0.3
5,234,163 + PP_4612 0.56 -0.9
5,234,163 + PP_4612 0.56 -0.4
5,234,163 + PP_4612 0.56 -0.1
5,234,163 + PP_4612 0.56 -0.2
5,234,163 + PP_4612 0.56 +0.0
5,234,163 + PP_4612 0.56 +0.0
5,234,163 + PP_4612 0.56 -0.4
5,234,163 + PP_4612 0.56 -0.2
5,234,163 + PP_4612 0.56 -0.3
5,234,164 - PP_4612 0.56 -0.6
5,234,164 - PP_4612 0.56 +0.1
5,234,164 - PP_4612 0.56 -0.3
5,234,164 - PP_4612 0.56 -0.3
5,234,164 - PP_4612 0.56 +0.4
5,234,164 - PP_4612 0.56 +0.0
5,234,168 + PP_4612 0.56 +0.2
5,234,168 + PP_4612 0.56 -0.3
5,234,169 - PP_4612 0.56 +0.5
5,234,169 - PP_4612 0.56 +0.1
5,234,169 - PP_4612 0.56 -0.2
5,234,193 + PP_4612 0.59 +0.1
5,234,210 + PP_4612 0.61 -0.6
5,234,211 - PP_4612 0.61 -0.8
5,234,211 - PP_4612 0.61 -0.2
5,234,212 + PP_4612 0.61 -0.6
5,234,213 - PP_4612 0.61 +1.5
5,234,463 - PP_4612 0.88 -0.3
5,234,571 - +0.1
5,234,571 - +0.2

Or see this region's nucleotide sequence