Strain Fitness in Pseudomonas putida KT2440 around PP_2079

Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
2,365,559	-				-0.5
2,365,784	+		PP_2078	0.24	-0.5
2,366,036	+		PP_2078	0.52	-0.2
2,366,138	+		PP_2078	0.63	+0.4
2,366,165	-		PP_2078	0.66	+0.2
2,366,377	-		PP_2078	0.90	+0.3
2,366,377	-		PP_2078	0.90	-0.4
2,366,377	-		PP_2078	0.90	+0.1
2,366,504	-				+0.3
2,366,545	-				-1.1
2,366,545	-				-0.3
2,366,657	-		PP_2079	0.22	-0.6
2,366,733	+				+1.4
2,366,734	-		PP_2079	0.39	-0.6
2,366,965	+		PP_2079	0.90	-0.9
2,366,965	+		PP_2079	0.90	-0.1
2,366,965	+		PP_2079	0.90	+0.1
2,366,965	+		PP_2079	0.90	+0.0
2,366,966	-		PP_2079	0.90	-0.5
2,366,966	-		PP_2079	0.90	-0.4
2,366,966	-		PP_2079	0.90	-0.2
2,367,016	+				+3.0
2,367,016	+				+1.0
2,367,016	+				+0.5
2,367,017	-				+0.2
2,367,088	-				-0.6
2,367,154	+				+0.2
2,367,176	-				-0.3
2,367,176	-				-0.4
2,367,420	+				+0.1
2,367,420	+				-0.3
2,367,421	-				+0.0
2,367,421	-				+0.0
2,367,432	+				-0.2
2,367,433	-				-0.1
2,367,643	-				+0.2
2,367,658	-				-0.5
2,367,658	-				-0.8
2,367,736	+		PP_2080	0.11	+0.5
2,367,736	+		PP_2080	0.11	-0.4
2,367,790	+		PP_2080	0.12	+0.7
2,367,895	-		PP_2080	0.15	+0.2
2,367,895	-		PP_2080	0.15	+0.0