Strain Fitness in Pseudomonas putida KT2440 around PP_0834
Experiment: TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 500 uM; timepoint 1 |
|---|---|---|---|---|---|
| remove | |||||
| 970,435 | + | PP_0833 | 0.25 | -1.9 | |
| 970,567 | + | PP_0833 | 0.37 | -1.9 | |
| 970,716 | + | PP_0833 | 0.51 | -2.8 | |
| 970,955 | + | PP_0833 | 0.72 | -1.2 | |
| 970,985 | + | PP_0833 | 0.75 | -0.9 | |
| 971,060 | + | PP_0833 | 0.81 | -0.7 | |
| 971,085 | + | PP_0833 | 0.84 | -2.9 | |
| 971,135 | + | PP_0833 | 0.88 | -1.1 | |
| 971,201 | + | -3.1 | |||
| 971,298 | + | +0.4 | |||
| 971,298 | + | +0.1 | |||
| 971,298 | + | +0.5 | |||
| 971,418 | + | PP_0834 | 0.32 | -0.2 | |
| 971,418 | + | PP_0834 | 0.32 | -2.1 | |
| 971,418 | + | PP_0834 | 0.32 | +0.5 | |
| 971,639 | + | -0.1 |
Or see this region's nucleotide sequence