Strain Fitness in Pseudomonas putida KT2440 around PP_5279

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
6,028,794	-		PP_5278	0.55	+0.1
6,028,794	-		PP_5278	0.55	-0.5
6,028,906	-		PP_5278	0.63	+0.5
6,029,045	+		PP_5278	0.72	+0.3
6,029,045	+		PP_5278	0.72	-0.2
6,029,046	-		PP_5278	0.72	-0.2
6,029,046	-		PP_5278	0.72	-0.2
6,029,046	-		PP_5278	0.72	-0.8
6,029,046	-		PP_5278	0.72	-0.2
6,029,461	-				-0.3
6,029,482	-				-0.1
6,029,482	-				-0.0
6,029,564	-				-0.2
6,029,632	-				-0.4
6,029,662	+				+0.4
6,029,662	+				+0.0
6,029,662	+				-0.2
6,029,662	+				-0.6
6,029,662	+				+0.5
6,029,662	+				-1.1
6,029,662	+				-0.6
6,029,662	+				-0.8
6,029,662	+				+0.3
6,029,663	-				-0.2
6,029,663	-				+0.3
6,029,663	-				-0.5
6,029,663	-				+0.4
6,029,663	-				-0.3
6,029,663	-				-0.9
6,029,763	-		PP_5279	0.29	-2.0
6,029,763	-		PP_5279	0.29	-1.4
6,029,806	-		PP_5279	0.41	-1.0
6,029,841	-		PP_5279	0.51	-1.1
6,029,855	+		PP_5279	0.55	-0.3
6,029,856	-		PP_5279	0.55	+0.0
6,029,856	-		PP_5279	0.55	-0.3
6,029,937	+		PP_5279	0.78	+0.6
6,029,938	-		PP_5279	0.78	-0.3
6,029,938	-		PP_5279	0.78	-1.2
6,029,993	+				+0.1
6,029,993	+				-0.2
6,029,994	-				+0.3
6,029,994	-				-0.7
6,029,994	-				-0.4
6,029,994	-				-0.5
6,029,994	-				-1.0
6,030,015	-				-0.4
6,030,026	+				+0.4
6,030,026	+				+0.7
6,030,026	+				+0.3
6,030,026	+				+0.5
6,030,026	+				+0.0
6,030,026	+				+0.0
6,030,027	-				-0.8
6,030,027	-				-0.1
6,030,027	-				-0.3
6,030,027	-				-0.3
6,030,027	-				-0.6
6,030,030	+				+0.6
6,030,030	+				+0.2
6,030,030	+				+0.3
6,030,030	+				-0.8
6,030,030	+				-0.0
6,030,030	+				-0.7
6,030,030	+				-0.0
6,030,030	+				+0.1
6,030,030	+				-0.3
6,030,030	+				-0.1
6,030,030	+				-0.1
6,030,031	-				-1.4
6,030,031	-				-0.4
6,030,031	-				-1.1
6,030,031	-				-1.3
6,030,031	-				+0.4
6,030,031	-				-0.3
6,030,031	-				-0.6
6,030,034	+				+0.1
6,030,034	+				+0.4
6,030,034	+				-0.1
6,030,035	-				-2.4
6,030,967	-				-0.9
6,030,967	-				-0.3
6,030,967	-				-0.6
6,030,978	-				+0.4