Strain Fitness in Pseudomonas putida KT2440 around PP_4037

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
4,548,395	-		PP_4036	0.49	+0.0
4,548,466	+		PP_4036	0.54	-0.5
4,548,466	+		PP_4036	0.54	-0.1
4,548,467	-		PP_4036	0.54	+0.2
4,548,731	+		PP_4036	0.72	-0.1
4,548,731	+		PP_4036	0.72	+0.8
4,548,732	-		PP_4036	0.72	-0.3
4,548,796	-		PP_4036	0.77	-0.3
4,549,043	-				+0.1
4,549,043	-				+0.5
4,549,072	+				-0.4
4,549,073	-				+0.2
4,549,073	-				+0.2
4,549,073	-				-0.0
4,549,223	+				+0.6
4,549,223	+				-0.2
4,549,224	-				+0.4
4,549,224	-				-0.1
4,549,224	-				+0.5
4,549,257	+				+0.2
4,549,257	+				+0.3
4,549,257	+				-0.1
4,549,258	-				+0.0
4,549,258	-				-0.4
4,549,258	-				-0.2
4,549,390	+				+0.1
4,549,390	+				+0.9
4,549,396	+				-0.7
4,549,396	+				-0.5
4,549,433	+		PP_4037	0.12	+0.5
4,549,433	+		PP_4037	0.12	+0.5
4,549,433	+		PP_4037	0.12	+0.0
4,549,451	+		PP_4037	0.14	-0.9
4,549,451	+		PP_4037	0.14	+0.1
4,549,624	+		PP_4037	0.26	-0.6
4,549,690	-		PP_4037	0.31	-0.0
4,549,804	+		PP_4037	0.39	-0.1
4,549,805	-		PP_4037	0.40	+0.0
4,549,837	+		PP_4037	0.42	+0.2
4,549,837	+		PP_4037	0.42	+0.2
4,549,837	+		PP_4037	0.42	-0.0
4,549,837	+		PP_4037	0.42	-0.5
4,549,838	-		PP_4037	0.42	-0.1
4,549,942	+		PP_4037	0.50	+0.1
4,549,942	+		PP_4037	0.50	+0.1
4,549,943	-		PP_4037	0.50	+0.5
4,549,988	+		PP_4037	0.53	-0.2
4,549,988	+		PP_4037	0.53	-0.1
4,549,989	-		PP_4037	0.53	-0.2
4,549,989	-		PP_4037	0.53	+0.0
4,550,035	+		PP_4037	0.56	+0.9
4,550,035	+		PP_4037	0.56	+0.2
4,550,036	-		PP_4037	0.56	+0.7
4,550,036	-		PP_4037	0.56	-0.1
4,550,036	-		PP_4037	0.56	+0.1
4,550,036	-		PP_4037	0.56	-0.3
4,550,176	+		PP_4037	0.67	+0.1
4,550,177	-		PP_4037	0.67	-0.2
4,550,243	+		PP_4037	0.72	-0.0
4,550,243	+		PP_4037	0.72	-0.2
4,550,243	+		PP_4037	0.72	-0.7
4,550,244	-		PP_4037	0.72	-0.1
4,550,512	+				-0.1
4,550,512	+				+0.3
4,550,513	-				-0.4
4,550,629	+				-0.3
4,550,629	+				-0.2
4,550,629	+				-0.0
4,550,630	-				+0.1
4,550,647	-				-0.6
4,550,651	+				+0.2
4,550,651	+				+0.1
4,550,651	+				-0.5
4,550,651	+				-0.2
4,550,651	+				-0.2
4,550,652	-				-0.2
4,550,652	-				-0.3
4,550,716	+				+0.1
4,550,716	+				-0.0
4,550,716	+				-0.0
4,550,716	+				-0.4
4,550,717	-				+0.1
4,550,821	+		PP_4038	0.15	+0.1
4,550,821	+		PP_4038	0.15	+0.0
4,550,840	+		PP_4038	0.16	+0.2
4,550,856	+		PP_4038	0.18	-0.1
4,550,967	-		PP_4038	0.26	-0.4
4,550,967	-		PP_4038	0.26	+0.1
4,551,051	+		PP_4038	0.33	+0.2
4,551,052	-		PP_4038	0.33	-0.3
4,551,098	-		PP_4038	0.37	-0.2
4,551,130	+		PP_4038	0.39	-0.6
4,551,131	-		PP_4038	0.39	+0.4
4,551,507	+		PP_4038	0.69	-0.0