Strain Fitness in Pseudomonas putida KT2440 around PP_3440

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
3,895,897	+				-0.2
3,895,981	+		PP_3439	0.10	+0.1
3,895,982	-		PP_3439	0.10	+0.0
3,896,122	-		PP_3439	0.27	-0.4
3,896,122	-		PP_3439	0.27	-0.6
3,896,301	-		PP_3439	0.48	-0.4
3,896,407	+		PP_3439	0.60	-0.2
3,896,408	-		PP_3439	0.60	-0.2
3,896,408	-		PP_3439	0.60	+0.1
3,896,408	-		PP_3439	0.60	-0.8
3,896,494	+		PP_3439	0.70	-0.7
3,896,494	+		PP_3439	0.70	+0.4
3,896,494	+				+1.0
3,896,495	-		PP_3439	0.71	+0.5
3,896,599	+		PP_3439	0.83	-0.1
3,896,599	+		PP_3439	0.83	+1.3
3,896,600	-		PP_3439	0.83	+0.6
3,896,606	+		PP_3439	0.84	-0.4
3,896,606	+		PP_3439	0.84	+0.3
3,896,606	+		PP_3439	0.84	-0.1
3,896,607	-		PP_3439	0.84	+0.7
3,896,607	-		PP_3439	0.84	-0.3
3,896,659	+		PP_3439	0.90	-0.4
3,896,660	-				+0.2
3,896,682	+				-0.6
3,896,749	+				+0.7
3,896,750	-				+0.5
3,896,782	+				-0.2
3,896,785	+				-0.1
3,896,785	+				-0.2
3,896,785	+				+0.2
3,896,786	-				+0.0
3,896,867	+				-0.3
3,896,868	-				-0.2
3,896,868	-				-0.3
3,896,908	-		PP_3440	0.10	-0.1
3,896,908	-		PP_3440	0.10	+0.5
3,896,913	+		PP_3440	0.11	-0.5
3,896,913	+		PP_3440	0.11	-0.9
3,896,916	+		PP_3440	0.11	+0.2
3,896,917	-				+0.3
3,897,022	+		PP_3440	0.21	-0.2
3,897,333	+		PP_3440	0.48	+0.4
3,897,334	-		PP_3440	0.48	+0.5
3,897,414	+		PP_3440	0.56	-0.2
3,897,414	+		PP_3440	0.56	-0.6
3,897,415	-		PP_3440	0.56	-0.3
3,897,415	-		PP_3440	0.56	-0.2
3,897,415	-		PP_3440	0.56	+0.7
3,897,465	-		PP_3440	0.60	-0.3
3,897,474	+		PP_3440	0.61	-0.2
3,897,524	-		PP_3440	0.65	-0.3
3,897,524	-		PP_3440	0.65	-0.2
3,897,564	+		PP_3440	0.69	+0.2
3,897,564	+		PP_3440	0.69	-0.1
3,897,564	+		PP_3440	0.69	+0.0
3,897,564	+		PP_3440	0.69	+0.4
3,897,587	+		PP_3440	0.71	-0.1
3,897,587	+		PP_3440	0.71	+0.4
3,897,587	+		PP_3440	0.71	+0.2
3,897,587	+		PP_3440	0.71	-0.7
3,897,587	+		PP_3440	0.71	-0.4
3,897,587	+		PP_3440	0.71	+0.5
3,897,588	-		PP_3440	0.71	-0.1
3,897,588	-		PP_3440	0.71	+0.5
3,897,588	-		PP_3440	0.71	+1.1
3,897,588	-		PP_3440	0.71	-0.4
3,897,604	-		PP_3440	0.73	+0.0
3,897,635	-		PP_3440	0.75	-0.3
3,897,834	+				-0.3
3,897,834	+				+0.0
3,897,834	+				+0.4
3,897,834	+				+0.0
3,897,834	+				-1.8
3,897,835	-				+0.2
3,897,835	-				-0.2
3,897,840	+				-0.1
3,897,981	+				+0.1
3,897,990	-				-0.4
3,898,033	+				+0.6
3,898,085	-				-0.1
3,898,085	-				-0.1
3,898,090	+				-0.4
3,898,090	+				+0.3
3,898,091	-				-0.6
3,898,091	-				-0.2
3,898,264	+		PP_3441	0.24	+0.0
3,898,265	-		PP_3441	0.24	+0.3
3,898,360	+		PP_3441	0.33	-0.5
3,898,360	+		PP_3441	0.33	-0.1
3,898,360	+		PP_3441	0.33	+0.1
3,898,360	+		PP_3441	0.33	-0.2
3,898,361	-		PP_3441	0.33	-0.5
3,898,361	-		PP_3441	0.33	-0.2
3,898,364	-		PP_3441	0.33	+0.4
3,898,364	-		PP_3441	0.33	-0.1
3,898,364	-		PP_3441	0.33	+0.1
3,898,462	+		PP_3441	0.41	-0.4
3,898,462	+		PP_3441	0.41	-0.3
3,898,503	+		PP_3441	0.45	+0.0
3,898,642	+		PP_3441	0.57	-0.7
3,898,643	-		PP_3441	0.57	-0.3
3,898,709	-		PP_3441	0.63	+0.6
3,898,807	+		PP_3441	0.71	+0.3
3,898,808	-		PP_3441	0.71	-0.5
3,898,808	-		PP_3441	0.71	-0.4