Strain Fitness in Pseudomonas putida KT2440 around PP_1924

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
2,170,874	+		PP_5484	0.27	-0.6
2,170,874	+		PP_5484	0.27	+0.3
2,170,875	-		PP_5484	0.27	-0.2
2,170,878	-		PP_5484	0.27	-0.9
2,170,878	-		PP_5484	0.27	-0.4
2,170,885	+		PP_5484	0.28	-0.1
2,170,885	+		PP_5484	0.28	-0.3
2,170,886	-		PP_5484	0.28	-0.0
2,170,886	-		PP_5484	0.28	-0.1
2,170,886	-		PP_5484	0.28	+0.6
2,170,886	-		PP_5484	0.28	-0.1
2,171,035	+		PP_5484	0.47	-0.1
2,171,035	+		PP_5484	0.47	-0.1
2,171,035	+		PP_5484	0.47	-0.0
2,171,035	+		PP_5484	0.47	-0.7
2,171,035	+		PP_5484	0.47	-0.4
2,171,035	+		PP_5484	0.47	-0.3
2,171,035	+		PP_5484	0.47	+1.0
2,171,035	+		PP_5484	0.47	-0.1
2,171,036	-		PP_5484	0.47	+0.0
2,171,036	-		PP_5484	0.47	+0.4
2,171,036	-		PP_5484	0.47	-0.3
2,171,083	+		PP_5484	0.53	-0.3
2,171,083	+		PP_5484	0.53	+1.1
2,171,083	+		PP_5484	0.53	-0.3
2,171,084	-		PP_5484	0.53	-0.1
2,171,084	-		PP_5484	0.53	-0.7
2,171,103	+		PP_5484	0.55	-0.7
2,171,112	-		PP_5484	0.56	+0.1
2,171,112	-		PP_5484	0.56	-0.4
2,171,160	+		PP_5484	0.62	-0.9
2,171,176	+		PP_5484	0.64	+0.1
2,171,176	+		PP_5484	0.64	-0.3
2,171,176	+				+1.5
2,171,176	+		PP_5484	0.64	+0.4
2,171,176	+		PP_5484	0.64	-0.5
2,171,176	+		PP_5484	0.64	-0.3
2,171,176	+		PP_5484	0.64	-0.3
2,171,177	-		PP_5484	0.64	-0.2
2,171,216	+		PP_5484	0.69	+0.4
2,171,216	+		PP_5484	0.69	+0.2
2,171,217	-		PP_5484	0.69	-0.1
2,171,373	+		PP_5484	0.88	-1.1
2,171,374	-		PP_5484	0.89	-0.3
2,171,377	-		PP_5484	0.89	-0.3
2,171,515	-				-0.1
2,171,515	-				-0.3
2,171,552	+				-0.1
2,171,553	-				-0.4
2,171,563	+				-0.1
2,171,563	+				-0.2
2,171,563	+				+0.6
2,171,563	+				+0.1
2,171,563	+				-0.2
2,171,564	-				-0.2
2,171,564	-				-0.4
2,171,564	-				+0.2
2,171,564	-				-0.3
2,171,647	-				-0.3
2,171,647	-				-0.3
2,171,736	-				+0.3
2,171,826	+				-0.1
2,171,826	+				-0.1
2,171,826	+				+0.2
2,171,826	+				+0.4
2,171,826	+				+0.6
2,171,827	-				+0.1
2,171,827	-				-0.8
2,171,827	-				-0.1
2,171,869	+				-0.0
2,171,892	+				+0.1
2,171,901	+				-0.2
2,171,901	+				+1.8
2,171,901	+				+0.6
2,171,902	-				-1.1
2,171,902	-				-0.5
2,171,999	+		PP_1924	0.23	+0.0
2,172,119	-		PP_1924	0.45	+0.7
2,172,119	-		PP_1924	0.45	-0.3
2,172,119	-		PP_1924	0.45	-0.4
2,172,119	-		PP_1924	0.45	+0.2
2,172,163	+		PP_1924	0.53	-0.2
2,172,163	+		PP_1924	0.53	+0.1
2,172,163	+		PP_1924	0.53	-0.2
2,172,164	-		PP_1924	0.53	+0.6
2,172,164	-		PP_1924	0.53	+0.2
2,172,221	-		PP_1924	0.63	-0.6
2,172,227	-		PP_1924	0.64	-0.8
2,172,234	+		PP_1924	0.65	+0.3
2,172,234	+		PP_1924	0.65	-0.1
2,172,263	-		PP_1924	0.70	+0.5
2,172,338	+		PP_1924	0.84	+0.3
2,172,339	-		PP_1924	0.84	+0.1
2,172,339	-		PP_1924	0.84	+0.4
2,172,339	-		PP_1924	0.84	-0.3
2,172,364	+		PP_1924	0.88	-0.1
2,172,364	+		PP_1924	0.88	+0.8
2,172,411	-				-0.1
2,172,460	+				+0.2
2,172,460	+				-0.4
2,172,567	+		PP_1925	0.13	+0.2
2,172,568	-		PP_1925	0.14	-0.9
2,172,655	-		PP_1925	0.22	-0.2
2,172,736	+		PP_1925	0.29	-0.2
2,172,792	+		PP_1925	0.34	-0.3
2,173,031	+		PP_1925	0.56	-0.5
2,173,032	-		PP_1925	0.56	-0.2
2,173,032	-		PP_1925	0.56	-0.3
2,173,079	+		PP_1925	0.61	-0.0
2,173,091	+		PP_1925	0.62	-0.0
2,173,092	-		PP_1925	0.62	+0.1
2,173,160	-		PP_1925	0.68	-0.6
2,173,215	+		PP_1925	0.73	-0.2
2,173,238	+		PP_1925	0.75	-0.6
2,173,238	+		PP_1925	0.75	+0.3
2,173,238	+		PP_1925	0.75	+0.3
2,173,238	+		PP_1925	0.75	+0.1
2,173,239	-		PP_1925	0.76	+0.4
2,173,239	-		PP_1925	0.76	+0.1
2,173,250	+		PP_1925	0.77	+0.2
2,173,250	+		PP_1925	0.77	+0.0
2,173,250	+		PP_1925	0.77	+0.0
2,173,251	-		PP_1925	0.77	+0.2
2,173,279	-		PP_1925	0.79	-0.9