Strain Fitness in Pseudomonas putida KT2440 around PP_1214

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
1,392,624	+				+0.2
1,392,624	+		PP_1214	0.72	-0.1
1,392,624	+		PP_1214	0.72	-1.3
1,392,624	+		PP_1214	0.72	-0.3
1,392,625	-		PP_1214	0.72	+0.2
1,392,625	-		PP_1214	0.72	-0.4
1,392,625	-		PP_1214	0.72	-0.1
1,392,636	-				+0.2
1,392,636	-				+0.0
1,392,783	+				-0.3
1,392,784	-				-0.4
1,392,908	-				-0.3
1,392,913	+				+0.3
1,392,913	+				+0.1
1,392,914	-				-0.6
1,392,914	-				-0.5
1,392,916	+				+1.2
1,392,917	-				-0.2
1,392,941	+				+0.2
1,392,947	+				-0.3
1,392,948	-				-0.3
1,392,948	-				-0.4
1,392,959	+				+0.8
1,392,960	-				+0.0
1,393,015	+				-0.4
1,393,015	+				-0.1
1,393,033	+				+0.1
1,393,062	-				-0.3
1,393,072	-		PP_1215	0.11	-0.5
1,393,097	+		PP_1215	0.15	-0.7
1,393,098	-		PP_1215	0.16	-0.7
1,393,538	+				-0.2
1,393,558	-				+0.1
1,393,577	+				-0.6
1,393,577	+				+0.5
1,393,577	+				-0.1
1,393,577	+				+0.2
1,393,578	-				-0.4
1,393,602	+				+0.4
1,393,602	+				-0.1
1,393,703	+				+0.4
1,393,704	-				-0.5
1,393,756	-		PP_1216	0.17	-1.0
1,393,794	-		PP_1216	0.23	-0.8