Strain Fitness in Pseudomonas putida KT2440 around PP_1214
Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1 |
---|---|---|---|---|---|
remove | |||||
1,392,624 | + | +0.2 | |||
1,392,624 | + | PP_1214 | 0.72 | -0.1 | |
1,392,624 | + | PP_1214 | 0.72 | -1.3 | |
1,392,624 | + | PP_1214 | 0.72 | -0.3 | |
1,392,625 | - | PP_1214 | 0.72 | +0.2 | |
1,392,625 | - | PP_1214 | 0.72 | -0.4 | |
1,392,625 | - | PP_1214 | 0.72 | -0.1 | |
1,392,636 | - | +0.2 | |||
1,392,636 | - | +0.0 | |||
1,392,783 | + | -0.3 | |||
1,392,784 | - | -0.4 | |||
1,392,908 | - | -0.3 | |||
1,392,913 | + | +0.3 | |||
1,392,913 | + | +0.1 | |||
1,392,914 | - | -0.6 | |||
1,392,914 | - | -0.5 | |||
1,392,916 | + | +1.2 | |||
1,392,917 | - | -0.2 | |||
1,392,941 | + | +0.2 | |||
1,392,947 | + | -0.3 | |||
1,392,948 | - | -0.3 | |||
1,392,948 | - | -0.4 | |||
1,392,959 | + | +0.8 | |||
1,392,960 | - | +0.0 | |||
1,393,015 | + | -0.4 | |||
1,393,015 | + | -0.1 | |||
1,393,033 | + | +0.1 | |||
1,393,062 | - | -0.3 | |||
1,393,072 | - | PP_1215 | 0.11 | -0.5 | |
1,393,097 | + | PP_1215 | 0.15 | -0.7 | |
1,393,098 | - | PP_1215 | 0.16 | -0.7 | |
1,393,538 | + | -0.2 | |||
1,393,558 | - | +0.1 | |||
1,393,577 | + | -0.6 | |||
1,393,577 | + | +0.5 | |||
1,393,577 | + | -0.1 | |||
1,393,577 | + | +0.2 | |||
1,393,578 | - | -0.4 | |||
1,393,602 | + | +0.4 | |||
1,393,602 | + | -0.1 | |||
1,393,703 | + | +0.4 | |||
1,393,704 | - | -0.5 | |||
1,393,756 | - | PP_1216 | 0.17 | -1.0 | |
1,393,794 | - | PP_1216 | 0.23 | -0.8 |
Or see this region's nucleotide sequence