Strain Fitness in Pseudomonas putida KT2440 around PP_5488

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
2,181,610	+				+0.1
2,181,645	+				+0.2
2,181,646	-				-0.2
2,181,655	+				+0.3
2,181,656	-				-0.2
2,181,668	-				+0.0
2,181,678	+				-1.1
2,181,719	+				-0.2
2,181,729	-				-0.2
2,181,885	-		PP_1935	0.51	+0.5
2,181,911	+		PP_1935	0.60	-0.1
2,181,949	-		PP_1935	0.72	+0.1
2,182,069	-				-0.1
2,182,132	-				-0.3
2,182,186	-				-0.0
2,182,194	+				+0.6
2,182,195	-				-0.0
2,182,359	+		PP_5487	0.43	-0.2
2,182,408	+		PP_5487	0.55	-0.4
2,182,413	-		PP_5487	0.57	+0.4
2,182,446	+		PP_5487	0.65	+0.4
2,182,580	+				+0.2
2,182,698	+		PP_5488	0.15	-0.1
2,182,743	+		PP_5488	0.22	-0.6
2,182,743	+		PP_5488	0.22	-0.5
2,182,909	-		PP_5488	0.47	+0.3
2,182,938	+		PP_5488	0.52	-0.4
2,182,938	+		PP_5488	0.52	-1.1
2,182,940	+		PP_5488	0.52	-0.7
2,183,189	+		PP_5488	0.90	-0.0
2,183,191	+				-0.1
2,183,192	-				-0.2
2,183,192	-				+0.5
2,183,195	+				-0.2
2,183,253	+				+0.1
2,183,254	-				-1.3
2,183,258	+				-0.1
2,183,259	-				+0.1
2,183,507	-		PP_5489	0.47	-0.1
2,183,535	+		PP_5489	0.53	+0.1
2,183,536	-		PP_5489	0.53	-0.4
2,183,592	+		PP_5489	0.64	-0.6
2,183,597	+		PP_5489	0.65	+0.0
2,183,597	+		PP_5489	0.65	-0.6
2,183,743	-				-0.6
2,183,789	-				-0.3
2,183,828	-				-0.0
2,183,942	+				+0.5
2,183,992	+				+0.4
2,184,004	+		PP_5490	0.11	-1.7
2,184,167	+		PP_5490	0.40	-1.1
2,184,167	+		PP_5490	0.40	+0.0
2,184,168	-		PP_5490	0.40	+0.4
2,184,236	+		PP_5490	0.52	-0.1
2,184,237	-		PP_5490	0.52	-0.6