Strain Fitness in Pseudomonas putida KT2440 around PP_4953

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
5,642,398	-		PP_4952	0.41	-0.2
5,642,921	+		PP_4952	0.79	+0.1
5,643,210	-				+0.2
5,643,213	+				-0.4
5,643,214	-				-0.0
5,643,214	-				-0.0
5,643,235	+				-0.4
5,643,504	-		PP_4953	0.14	-0.0
5,643,615	-		PP_4953	0.23	-0.6
5,644,259	+		PP_4953	0.78	-0.2
5,644,259	+		PP_4953	0.78	-0.9
5,644,259	+		PP_4953	0.78	-0.5
5,644,311	+		PP_4953	0.82	-0.2
5,644,311	+		PP_4953	0.82	+0.2
5,644,311	+		PP_4953	0.82	-0.5
5,644,312	-		PP_4953	0.82	-0.5
5,644,312	-		PP_4953	0.82	-0.6
5,644,421	+				-0.2
5,644,421	+				-0.1
5,644,422	-				+0.4
5,644,518	-				-0.3
5,644,522	+				-0.1
5,644,522	+				-0.3
5,644,523	-				-0.0
5,644,523	-				-0.0
5,644,523	-				-0.9
5,644,576	+				-0.3
5,644,617	+				-0.7
5,644,617	+				-0.5
5,644,708	+				-0.1
5,644,708	+				+0.1
5,644,708	+				-0.0
5,644,708	+				+0.1
5,644,760	-				-0.4
5,644,760	-				+0.2
5,644,910	+		PP_4954	0.12	-0.1
5,644,910	+		PP_4954	0.12	-0.4
5,644,911	-		PP_4954	0.12	-0.3
5,644,911	-		PP_4954	0.12	+0.2
5,645,032	+		PP_4954	0.18	+0.5
5,645,033	-		PP_4954	0.18	-0.1
5,645,033	-		PP_4954	0.18	+0.2
5,645,209	+		PP_4954	0.26	+0.3
5,645,210	-		PP_4954	0.26	-0.0
5,645,373	-		PP_4954	0.33	+0.6
5,645,381	-		PP_4954	0.34	-0.1
5,645,393	-		PP_4954	0.34	-0.0
5,645,393	-		PP_4954	0.34	-0.5
5,645,443	+		PP_4954	0.36	-0.4