Strain Fitness in Pseudomonas putida KT2440 around PP_3862

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
4,385,164	-		PP_3860	0.64	+0.2
4,385,250	+		PP_3860	0.73	-0.1
4,385,253	+		PP_3860	0.73	+0.5
4,385,253	+		PP_3860	0.73	+0.1
4,385,396	+		PP_3860	0.87	-0.0
4,385,397	-		PP_3860	0.87	+0.0
4,385,397	-		PP_3860	0.87	-0.7
4,385,405	+		PP_3860	0.87	+0.5
4,385,405	+		PP_3860	0.87	+0.8
4,385,419	-		PP_3860	0.89	+0.3
4,385,528	+				+0.3
4,385,528	+				-0.6
4,385,551	+				-0.4
4,385,552	-				-0.7
4,385,597	+		PP_3861	0.19	-0.3
4,385,598	-		PP_3861	0.19	-0.4
4,385,656	+		PP_3861	0.34	+0.1
4,385,700	+		PP_3861	0.45	-0.4
4,385,700	+		PP_3861	0.45	-0.1
4,385,988	+		PP_3862	0.16	+0.2
4,386,037	-		PP_3862	0.26	+0.2
4,386,149	+		PP_3862	0.48	+0.1
4,386,149	+		PP_3862	0.48	-0.2
4,386,150	-		PP_3862	0.48	+0.6
4,386,150	-		PP_3862	0.48	+0.5
4,386,150	-		PP_3862	0.48	+0.2
4,386,338	-		PP_3862	0.86	+0.1
4,386,398	-				-0.1
4,386,427	+				-0.5
4,386,445	+				-0.7
4,386,446	-				-0.1
4,386,493	+				-0.5
4,386,494	-				-0.2
4,386,574	+		PP_3863	0.14	-0.2
4,386,575	-		PP_3863	0.14	-0.2
4,386,575	-		PP_3863	0.14	+0.4
4,386,575	-		PP_3863	0.14	+0.2
4,386,575	-		PP_3863	0.14	-0.5
4,386,691	+		PP_3863	0.25	-0.5
4,386,691	+		PP_3863	0.25	-0.1
4,386,692	-		PP_3863	0.25	-0.1
4,387,289	-		PP_3863	0.79	-0.0
4,387,313	-		PP_3863	0.81	+0.5