Strain Fitness in Pseudomonas putida KT2440 around PP_3404

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
3,854,499	-		PP_3403	0.21	-0.2
3,854,499	-		PP_3403	0.21	-0.9
3,854,499	-		PP_3403	0.21	-0.0
3,854,499	-		PP_3403	0.21	+0.7
3,854,499	-		PP_3403	0.21	-0.2
3,854,504	+		PP_3403	0.21	+0.2
3,854,504	+		PP_3403	0.21	+0.3
3,854,504	+		PP_3403	0.21	-0.1
3,854,504	+		PP_3403	0.21	-0.3
3,854,505	-		PP_3403	0.21	+0.5
3,854,505	-		PP_3403	0.21	-0.7
3,854,505	-		PP_3403	0.21	-0.1
3,854,505	-		PP_3403	0.21	-0.1
3,854,505	-		PP_3403	0.21	-0.2
3,854,505	-		PP_3403	0.21	+0.6
3,854,505	-		PP_3403	0.21	-0.8
3,854,526	-		PP_3403	0.24	-0.1
3,854,704	-		PP_3403	0.44	-0.5
3,854,985	+		PP_3403	0.75	+0.1
3,854,985	+		PP_3403	0.75	-0.4
3,855,441	+				-1.2
3,855,441	+		PP_3404	0.16	+0.2
3,855,441	+		PP_3404	0.16	+0.2
3,855,442	-		PP_3404	0.16	-0.2
3,855,456	+		PP_3404	0.18	-0.4
3,855,456	+		PP_3404	0.18	+1.2
3,855,457	-		PP_3404	0.18	-0.3
3,855,597	+		PP_3404	0.34	-0.3
3,855,598	-		PP_3404	0.34	+1.2
3,855,598	-		PP_3404	0.34	+0.1
3,856,047	+		PP_3404	0.86	+0.3
3,856,089	-				+0.2
3,856,178	-				-0.2
3,856,183	-				+0.2
3,856,183	-				+1.2
3,856,388	+		PP_3405	0.31	+0.1
3,856,388	+		PP_3405	0.31	-0.4
3,856,389	-		PP_3405	0.31	-0.0
3,856,389	-		PP_3405	0.31	+0.2
3,856,389	-		PP_3405	0.31	+0.3
3,856,392	+		PP_3405	0.32	+0.2
3,856,392	+		PP_3405	0.32	+0.1
3,856,392	+		PP_3405	0.32	+0.4
3,856,392	+		PP_3405	0.32	-0.4
3,856,393	-		PP_3405	0.32	-0.3
3,856,393	-		PP_3405	0.32	+0.1
3,856,393	-		PP_3405	0.32	-0.2
3,856,393	-		PP_3405	0.32	-0.0
3,856,393	-		PP_3405	0.32	+0.4
3,856,410	+		PP_3405	0.34	-0.9
3,856,410	+		PP_3405	0.34	+0.7
3,856,411	-		PP_3405	0.35	-0.3
3,856,411	-		PP_3405	0.35	-0.7
3,856,417	+		PP_3405	0.36	-0.4
3,856,418	-		PP_3405	0.36	-0.5
3,856,554	+		PP_3405	0.57	-0.3
3,856,554	+		PP_3405	0.57	+0.3
3,856,594	-		PP_3405	0.64	-0.1
3,856,616	+		PP_3405	0.67	+0.0
3,856,616	+		PP_3405	0.67	+0.2
3,856,617	-		PP_3405	0.67	-0.3
3,856,673	-		PP_3405	0.76	-1.0
3,856,764	-				+0.1
3,856,764	-				-0.1
3,856,834	+				-1.1
3,856,837	-				+0.4
3,856,837	-				-0.6
3,856,904	-				-0.0
3,856,915	+				-0.3
3,856,916	-				+0.2
3,857,148	+		PP_3406	0.42	+0.2
3,857,149	-		PP_3406	0.42	-0.1
3,857,154	+		PP_3406	0.43	+0.6
3,857,154	+		PP_3406	0.43	+0.2
3,857,155	-		PP_3406	0.43	+0.0
3,857,155	-		PP_3406	0.43	-0.0
3,857,155	-		PP_3406	0.43	+0.5
3,857,160	+		PP_3406	0.44	-0.2
3,857,161	-		PP_3406	0.45	+0.1