Strain Fitness in Pseudomonas putida KT2440 around PP_2616

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
2,991,209	-		PP_2614	0.88	-0.6
2,991,212	-		PP_2614	0.88	+0.1
2,991,212	-				+0.7
2,991,212	-		PP_2614	0.88	-0.5
2,991,212	-		PP_2614	0.88	-1.3
2,991,600	-				+0.1
2,991,600	-				-0.6
2,991,826	-		PP_2615	0.53	-0.2
2,991,826	-		PP_2615	0.53	-0.5
2,991,839	-		PP_2615	0.55	-0.0
2,992,270	+				+0.6
2,992,270	+				-0.7
2,992,270	+				+0.2
2,992,270	+				-0.5
2,992,373	-		PP_2616	0.20	-0.2
2,992,681	-		PP_2616	0.55	-0.1
2,992,700	-		PP_2616	0.57	-0.4
2,992,706	-		PP_2616	0.58	-0.8
2,992,776	+		PP_2616	0.66	-1.3
2,992,776	+		PP_2616	0.66	-1.2
2,992,820	+		PP_2616	0.71	-0.5
2,992,820	+		PP_2616	0.71	-0.4
2,993,054	+				-0.4
2,993,055	-				+0.0
2,993,055	-				-0.2
2,993,055	-				+0.5
2,993,502	+		PP_2617	0.32	-0.2
2,993,502	+		PP_2617	0.32	+0.3
2,993,556	-		PP_2617	0.36	+0.1
2,993,624	+		PP_2617	0.41	-0.2
2,993,625	-		PP_2617	0.41	-0.5
2,993,625	-		PP_2617	0.41	-0.4
2,993,625	-		PP_2617	0.41	+0.1
2,993,625	-		PP_2617	0.41	-0.0
2,993,787	+		PP_2617	0.53	-0.2
2,993,788	-		PP_2617	0.53	+0.0
2,993,803	+		PP_2617	0.54	+0.5
2,993,852	+		PP_2617	0.58	-0.2
2,993,901	+		PP_2617	0.62	+0.2
2,993,902	-		PP_2617	0.62	+0.1
2,993,980	+		PP_2617	0.68	+0.4
2,993,981	-		PP_2617	0.68	+0.3
2,994,029	-		PP_2617	0.71	-0.1
2,994,040	-		PP_2617	0.72	+0.2