Strain Fitness in Pseudomonas putida KT2440 around PP_2358

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
2,690,491	+				-1.7
2,690,492	-				+0.4
2,690,602	+				+0.2
2,690,602	+				-0.4
2,690,643	+				-0.0
2,690,644	-				+1.8
2,690,644	-				-0.2
2,690,644	-				+0.1
2,690,661	-				+0.5
2,690,690	+				+0.7
2,690,690	+				-0.5
2,690,721	-		PP_2357	0.10	+0.1
2,690,880	-		PP_2357	0.37	-0.0
2,690,986	-		PP_2357	0.55	+0.6
2,691,037	-		PP_2357	0.63	-0.2
2,691,085	-		PP_2357	0.71	+0.2
2,691,174	+		PP_2357	0.86	-0.5
2,691,175	-		PP_2357	0.87	+0.5
2,691,175	-		PP_2357	0.87	+0.2
2,691,175	-		PP_2357	0.87	+0.2
2,691,182	+		PP_2357	0.88	+0.1
2,691,220	-				-0.4
2,691,264	+				+0.5
2,691,576	-		PP_2358	0.54	+0.8
2,691,643	-		PP_2358	0.67	+0.9
2,691,710	+		PP_2358	0.79	-0.0
2,691,711	-		PP_2358	0.79	+0.5
2,691,741	+		PP_2358	0.85	+0.8
2,691,742	-		PP_2358	0.85	-0.3
2,691,742	-		PP_2358	0.85	+0.0
2,691,742	-		PP_2358	0.85	+0.1
2,691,742	-		PP_2358	0.85	+0.4
2,691,742	-		PP_2358	0.85	-0.3
2,691,751	+		PP_2358	0.87	-0.1
2,692,100	+		PP_2359	0.49	-0.0
2,692,100	+		PP_2359	0.49	-0.5
2,692,100	+		PP_2359	0.49	+0.5
2,692,105	+		PP_2359	0.50	-0.2
2,692,105	+		PP_2359	0.50	+0.3
2,692,105	+		PP_2359	0.50	+0.2
2,692,106	-		PP_2359	0.50	+0.3
2,692,193	-		PP_2359	0.66	+1.1
2,692,198	-		PP_2359	0.67	+0.1
2,692,198	-		PP_2359	0.67	+0.4
2,692,269	-		PP_2359	0.80	+0.2
2,692,296	+		PP_2359	0.85	+0.1
2,692,338	+				+0.1
2,692,339	-				+0.7
2,692,339	-				+0.1
2,692,339	-				+0.3
2,692,339	-				+0.4
2,692,339	-				-0.1
2,692,339	-				-0.7
2,692,448	+				+1.0
2,692,530	+		PP_2360	0.30	-0.5
2,692,586	+		PP_2360	0.41	-0.4
2,692,587	-		PP_2360	0.42	+0.2
2,692,730	+		PP_2360	0.70	-0.3
2,692,771	-		PP_2360	0.78	-0.2