Strain Fitness in Pseudomonas putida KT2440 around PP_0740

Experiment: TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0739 and PP_0740 overlap by 10 nucleotidesPP_0740 and PP_0741 overlap by 11 nucleotides PP_0739: PP_0739 - deoxyribodipyrimidine photolyase, at 857,381 to 858,823 _0739 PP_0740: PP_0740 - Transcriptional regulator, MerR family, at 858,814 to 859,713 _0740 PP_0741: PP_0741 - conserved protein of unknown function, at 859,703 to 860,671 _0741 Position (kb) 858 859 860Strain fitness (log2 ratio) -1 0 1at 857.971 kb on - strand, within PP_0739at 857.988 kb on - strand, within PP_0739at 858.118 kb on + strand, within PP_0739at 858.119 kb on - strand, within PP_0739at 858.260 kb on + strand, within PP_0739at 858.391 kb on - strand, within PP_0739at 858.410 kb on + strand, within PP_0739at 858.410 kb on + strand, within PP_0739at 858.411 kb on - strand, within PP_0739at 858.411 kb on - strand, within PP_0739at 858.411 kb on - strand, within PP_0739at 858.520 kb on - strand, within PP_0739at 858.520 kb on - strand, within PP_0739at 858.565 kb on + strand, within PP_0739at 858.664 kb on + strand, within PP_0739at 858.665 kb on - strand, within PP_0739at 858.832 kb on + strandat 858.832 kb on + strandat 858.832 kb on + strandat 858.832 kb on + strandat 858.832 kb on + strandat 858.833 kb on - strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.838 kb on + strandat 858.839 kb on - strandat 859.039 kb on + strand, within PP_0740at 859.040 kb on - strand, within PP_0740at 859.136 kb on - strand, within PP_0740at 859.153 kb on + strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.154 kb on - strand, within PP_0740at 859.230 kb on - strand, within PP_0740at 859.230 kb on - strand, within PP_0740at 859.298 kb on + strand, within PP_0740at 859.298 kb on + strand, within PP_0740at 859.299 kb on - strand, within PP_0740at 859.299 kb on - strand, within PP_0740at 859.749 kb on + strandat 859.750 kb on - strandat 859.750 kb on - strandat 859.750 kb on - strandat 859.750 kb on - strandat 859.767 kb on + strandat 859.817 kb on + strand, within PP_0741at 859.817 kb on + strand, within PP_0741at 859.818 kb on - strand, within PP_0741at 859.927 kb on + strand, within PP_0741at 859.928 kb on - strand, within PP_0741at 860.082 kb on + strand, within PP_0741at 860.082 kb on + strand, within PP_0741at 860.083 kb on - strand, within PP_0741at 860.088 kb on + strand, within PP_0741at 860.089 kb on - strand, within PP_0741at 860.158 kb on - strand, within PP_0741at 860.174 kb on + strand, within PP_0741at 860.174 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.223 kb on - strand, within PP_0741at 860.262 kb on + strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1
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857,971 - PP_0739 0.41 +1.0
857,988 - PP_0739 0.42 -0.0
858,118 + PP_0739 0.51 +0.3
858,119 - PP_0739 0.51 -0.4
858,260 + PP_0739 0.61 -0.0
858,391 - PP_0739 0.70 +0.1
858,410 + PP_0739 0.71 -0.3
858,410 + PP_0739 0.71 -0.8
858,411 - PP_0739 0.71 -0.7
858,411 - PP_0739 0.71 -0.3
858,411 - PP_0739 0.71 -0.2
858,520 - PP_0739 0.79 -0.1
858,520 - PP_0739 0.79 +0.2
858,565 + PP_0739 0.82 -0.8
858,664 + PP_0739 0.89 +0.2
858,665 - PP_0739 0.89 -0.1
858,832 + -0.1
858,832 + +0.0
858,832 + -0.2
858,832 + -0.1
858,832 + -0.4
858,833 - +0.1
858,838 + +0.3
858,838 + -0.9
858,838 + -0.2
858,838 + -0.1
858,839 - -0.3
859,039 + PP_0740 0.25 -0.2
859,040 - PP_0740 0.25 -0.2
859,136 - PP_0740 0.36 -0.1
859,153 + PP_0740 0.38 -0.1
859,154 - PP_0740 0.38 +0.2
859,154 - PP_0740 0.38 +0.1
859,154 - PP_0740 0.38 -0.1
859,154 - PP_0740 0.38 +0.1
859,154 - PP_0740 0.38 -0.1
859,230 - PP_0740 0.46 -0.4
859,230 - PP_0740 0.46 +1.1
859,298 + PP_0740 0.54 +1.5
859,298 + PP_0740 0.54 -0.4
859,299 - PP_0740 0.54 +0.2
859,299 - PP_0740 0.54 -0.1
859,749 + +0.3
859,750 - -0.6
859,750 - -0.9
859,750 - +0.5
859,750 - -0.2
859,767 + +0.1
859,817 + PP_0741 0.12 -0.3
859,817 + PP_0741 0.12 +0.2
859,818 - PP_0741 0.12 -0.1
859,927 + PP_0741 0.23 -0.1
859,928 - PP_0741 0.23 +0.1
860,082 + PP_0741 0.39 -0.3
860,082 + PP_0741 0.39 -0.7
860,083 - PP_0741 0.39 -0.1
860,088 + PP_0741 0.40 -0.2
860,089 - PP_0741 0.40 +0.1
860,158 - PP_0741 0.47 -0.1
860,174 + PP_0741 0.49 -0.0
860,174 + PP_0741 0.49 +0.3
860,222 + PP_0741 0.54 +0.4
860,222 + PP_0741 0.54 +0.1
860,222 + PP_0741 0.54 +0.4
860,223 - PP_0741 0.54 +0.6
860,262 + PP_0741 0.58 -0.5
860,263 - PP_0741 0.58 +0.1
860,263 - PP_0741 0.58 -0.7
860,263 - PP_0741 0.58 +0.5
860,401 - PP_0741 0.72 -0.0
860,401 - PP_0741 0.72 +0.0
860,401 - PP_0741 0.72 -1.0
860,599 - -0.4

Or see this region's nucleotide sequence