Strain Fitness in Escherichia coli BW25113 around b3468

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
3,602,780	-	yhhF	b3465	0.61	+0.1
3,602,780	-	yhhF	b3465	0.61	+0.4
3,602,783	-	yhhF	b3465	0.61	-0.0
3,602,882	-	yhhF	b3465	0.78	-1.0
3,602,907	+	yhhF	b3465	0.82	+0.4
3,602,947	-	yhhF	b3465	0.89	+0.9
3,602,992	-				+1.1
3,602,993	+				+0.3
3,603,015	-				-2.2
3,603,062	-	yhhL	b3466	0.22	+0.3
3,603,062	-	yhhL	b3466	0.22	-0.2
3,603,065	+	yhhL	b3466	0.23	+0.4
3,603,065	+	yhhL	b3466	0.23	+0.2
3,603,083	-	yhhL	b3466	0.30	+0.2
3,603,134	+	yhhL	b3466	0.49	-0.2
3,603,134	+	yhhL	b3466	0.49	+0.4
3,603,135	+	yhhL	b3466	0.49	+0.1
3,603,135	+	yhhL	b3466	0.49	+0.4
3,603,143	-	yhhL	b3466	0.52	+0.5
3,603,159	-	yhhL	b3466	0.58	+0.1
3,603,225	+	yhhL	b3466	0.83	+0.3
3,603,247	-				-0.6
3,603,279	-				-0.4
3,603,279	-				+0.2
3,603,314	-	yhhM	b3467	0.11	-0.1
3,603,314	-	yhhM	b3467	0.11	-0.5
3,603,316	+	yhhM	b3467	0.12	+0.2
3,603,316	+	yhhM	b3467	0.12	-0.1
3,603,339	+	yhhM	b3467	0.18	-1.4
3,603,352	+	yhhM	b3467	0.22	+0.1
3,603,357	+	yhhM	b3467	0.23	+0.6
3,603,360	-	yhhM	b3467	0.24	-0.2
3,603,410	-	yhhM	b3467	0.38	+0.2
3,603,420	+	yhhM	b3467	0.41	-0.2
3,603,423	+	yhhM	b3467	0.41	+0.4
3,603,435	-	yhhM	b3467	0.45	-1.7
3,603,470	+	yhhM	b3467	0.54	-0.8
3,603,678	+				-0.6
3,603,726	+				-0.2
3,603,776	+				-0.2
3,603,812	+				-0.3
3,603,825	+				-0.5
3,603,825	+				+0.1
3,603,945	+	yhhN	b3468	0.27	+1.1
3,603,945	+	yhhN	b3468	0.27	-3.9
3,603,955	-	yhhN	b3468	0.29	+0.1
3,603,960	+	yhhN	b3468	0.30	+1.4
3,603,960	+	yhhN	b3468	0.30	-2.3
3,603,968	-	yhhN	b3468	0.31	-0.4
3,603,980	-	yhhN	b3468	0.33	-0.7
3,603,980	-	yhhN	b3468	0.33	+0.0
3,603,996	+	yhhN	b3468	0.35	-0.1
3,603,996	+	yhhN	b3468	0.35	-0.6
3,604,037	+	yhhN	b3468	0.42	-0.4
3,604,037	+	yhhN	b3468	0.42	-0.4
3,604,037	+	yhhN	b3468	0.42	-0.6
3,604,037	+	yhhN	b3468	0.42	+0.4
3,604,037	+	yhhN	b3468	0.42	-0.0
3,604,045	-	yhhN	b3468	0.43	-0.4
3,604,045	-	yhhN	b3468	0.43	-0.3
3,604,045	-	yhhN	b3468	0.43	+0.3
3,604,071	+	yhhN	b3468	0.47	-0.3
3,604,071	+	yhhN	b3468	0.47	-0.1
3,604,087	+	yhhN	b3468	0.50	-0.1
3,604,087	+	yhhN	b3468	0.50	+0.4
3,604,087	+	yhhN	b3468	0.50	-0.3
3,604,087	+	yhhN	b3468	0.50	+0.2
3,604,092	-	yhhN	b3468	0.51	-1.7
3,604,092	-	yhhN	b3468	0.51	+0.3
3,604,095	-	yhhN	b3468	0.51	-0.1
3,604,095	-	yhhN	b3468	0.51	-0.8
3,604,095	-	yhhN	b3468	0.51	+0.3
3,604,095	-	yhhN	b3468	0.51	+0.4
3,604,095	-	yhhN	b3468	0.51	-0.0
3,604,095	-	yhhN	b3468	0.51	+0.8
3,604,095	-	yhhN	b3468	0.51	-0.3
3,604,107	+	yhhN	b3468	0.53	+0.5
3,604,107	+	yhhN	b3468	0.53	-0.5
3,604,119	+	yhhN	b3468	0.55	-0.4
3,604,157	-	yhhN	b3468	0.61	-0.1
3,604,167	+	yhhN	b3468	0.63	+0.4
3,604,167	+	yhhN	b3468	0.63	-0.0
3,604,170	-	yhhN	b3468	0.63	-1.5
3,604,170	-	yhhN	b3468	0.63	-1.1
3,604,193	+	yhhN	b3468	0.67	-0.2
3,604,193	+	yhhN	b3468	0.67	-0.0
3,604,193	+	yhhN	b3468	0.67	-0.6
3,604,199	-	yhhN	b3468	0.68	-0.3
3,604,229	-	yhhN	b3468	0.73	+0.4
3,604,229	-	yhhN	b3468	0.73	-0.7
3,604,360	-				-0.8
3,604,387	+				-0.3
3,604,392	-				-1.0
3,604,392	-				+0.6
3,604,423	-				-1.8
3,604,549	+				-1.5
3,604,586	+				-1.5
3,604,594	-				-2.6
3,604,594	-				-0.1
3,604,594	-				-2.7
3,604,639	+				-0.9
3,604,716	+	zntA	b3469	0.11	-0.7
3,604,716	+	zntA	b3469	0.11	-1.7
3,604,780	+	zntA	b3469	0.14	-1.1
3,604,808	+	zntA	b3469	0.15	-1.7
3,604,808	+	zntA	b3469	0.15	-2.7
3,604,973	-	zntA	b3469	0.23	+0.0
3,604,973	-	zntA	b3469	0.23	-1.5
3,604,999	+	zntA	b3469	0.24	-1.1
3,605,025	-	zntA	b3469	0.25	-1.8
3,605,025	-	zntA	b3469	0.25	-1.0
3,605,049	-	zntA	b3469	0.26	-2.4
3,605,049	-	zntA	b3469	0.26	-0.4
3,605,058	+	zntA	b3469	0.27	-1.0
3,605,202	-	zntA	b3469	0.33	+0.0
3,605,207	-	zntA	b3469	0.33	-2.2
3,605,207	-	zntA	b3469	0.33	-1.7
3,605,298	+	zntA	b3469	0.37	-1.1
3,605,307	-	zntA	b3469	0.38	-1.7
3,605,368	+	zntA	b3469	0.41	-2.4