Strain Fitness in Escherichia coli BW25113 around b2132

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
2,216,745	-	yehZ	b2131	0.17	-0.2
2,216,745	-	yehZ	b2131	0.17	-0.2
2,216,748	-	yehZ	b2131	0.18	-0.5
2,216,767	-	yehZ	b2131	0.20	+0.5
2,216,782	+	yehZ	b2131	0.21	-0.0
2,216,950	-	yehZ	b2131	0.40	+0.4
2,216,950	-	yehZ	b2131	0.40	+0.6
2,216,955	+	yehZ	b2131	0.40	-0.6
2,216,955	+	yehZ	b2131	0.40	-0.2
2,217,019	+	yehZ	b2131	0.47	-0.7
2,217,153	-	yehZ	b2131	0.62	+1.4
2,217,153	-	yehZ	b2131	0.62	+0.2
2,217,260	+	yehZ	b2131	0.73	-0.7
2,217,311	-	yehZ	b2131	0.79	+0.7
2,217,311	-	yehZ	b2131	0.79	-0.4
2,217,328	+	yehZ	b2131	0.81	-0.3
2,217,376	+	yehZ	b2131	0.86	-0.2
2,217,463	+				+0.0
2,217,470	+				-0.3
2,217,560	-				-0.5
2,217,621	-				+0.4
2,217,682	-				+0.5
2,217,769	+				-0.2
2,218,066	+	bglX	b2132	0.15	-0.5
2,218,089	+	bglX	b2132	0.16	+0.6
2,218,089	+	bglX	b2132	0.16	-1.2
2,218,305	-	bglX	b2132	0.26	+0.6
2,218,470	+	bglX	b2132	0.33	+0.0
2,218,470	+	bglX	b2132	0.33	-0.9
2,218,476	-	bglX	b2132	0.33	-1.0
2,218,476	-	bglX	b2132	0.33	-0.9
2,218,483	-	bglX	b2132	0.33	+0.0
2,218,483	-	bglX	b2132	0.33	-0.1
2,218,544	+	bglX	b2132	0.36	+0.3
2,218,544	+	bglX	b2132	0.36	+1.0
2,218,688	-	bglX	b2132	0.42	-1.1
2,218,688	-	bglX	b2132	0.42	-0.1
2,218,767	-	bglX	b2132	0.46	+0.2
2,218,871	-	bglX	b2132	0.50	-0.9
2,218,871	-	bglX	b2132	0.50	-1.2
2,218,974	-	bglX	b2132	0.55	+0.1
2,219,011	+	bglX	b2132	0.56	-0.6
2,219,011	+	bglX	b2132	0.56	+0.8
2,219,038	+	bglX	b2132	0.58	+0.1
2,219,038	+	bglX	b2132	0.58	-0.7
2,219,043	+	bglX	b2132	0.58	-0.4
2,219,130	-	bglX	b2132	0.62	-0.8
2,219,130	-	bglX	b2132	0.62	-1.4
2,219,140	-	bglX	b2132	0.62	-0.3
2,219,307	-	bglX	b2132	0.69	+0.5
2,219,343	+	bglX	b2132	0.71	-0.1
2,219,398	+	bglX	b2132	0.73	+0.0
2,219,398	+	bglX	b2132	0.73	-0.1
2,219,407	+	bglX	b2132	0.74	-0.4
2,219,415	-	bglX	b2132	0.74	-1.8
2,219,539	-	bglX	b2132	0.79	-0.5
2,219,559	-	bglX	b2132	0.80	+0.5
2,219,659	-	bglX	b2132	0.85	-0.2
2,219,664	-	bglX	b2132	0.85	-0.5
2,219,891	+				-1.0
2,219,891	+				+0.0
2,219,969	+				-0.7
2,219,969	+				-0.3
2,219,977	-				+0.3
2,219,978	-				+0.1
2,219,998	-				-0.3
2,220,036	-				+0.2
2,220,147	+				+0.7
2,220,147	+				+0.9
2,220,167	-				+0.9
2,220,167	-				+0.4
2,220,206	-				+1.2
2,220,206	-				+0.3
2,220,220	-				+0.0
2,220,276	-				+0.0
2,220,276	-				-0.4
2,220,279	-				+0.9
2,220,330	+				+0.5
2,220,560	-	dld	b2133	0.21	-0.3
2,220,623	+	dld	b2133	0.24	-0.5
2,220,635	+	dld	b2133	0.25	+0.7
2,220,651	-	dld	b2133	0.26	-0.1
2,220,781	+	dld	b2133	0.33	-0.1
2,220,781	+	dld	b2133	0.33	+0.7
2,220,784	-	dld	b2133	0.34	+0.0
2,220,784	-	dld	b2133	0.34	+0.2
2,220,811	+	dld	b2133	0.35	+0.7