Strain Fitness in Escherichia coli BW25113 around b4390

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
4,624,405	-	radA	b4389	0.34	-0.2
4,624,405	-	radA	b4389	0.34	-1.1
4,624,422	+	radA	b4389	0.35	-0.7
4,624,490	+	radA	b4389	0.40	-0.1
4,624,490	+	radA	b4389	0.40	+0.1
4,624,498	-	radA	b4389	0.41	+0.5
4,624,532	-	radA	b4389	0.43	-0.9
4,624,569	+	radA	b4389	0.46	-0.9
4,624,620	+	radA	b4389	0.50	-0.4
4,624,648	-	radA	b4389	0.52	+0.6
4,624,755	+	radA	b4389	0.59	-0.3
4,624,755	+	radA	b4389	0.59	+1.0
4,624,826	+	radA	b4389	0.64	+0.0
4,624,826	+	radA	b4389	0.64	-0.4
4,624,827	+	radA	b4389	0.64	-0.3
4,624,832	+	radA	b4389	0.65	-0.1
4,624,855	-	radA	b4389	0.67	-0.1
4,624,864	+	radA	b4389	0.67	+0.0
4,624,898	+	radA	b4389	0.70	-0.2
4,624,898	+	radA	b4389	0.70	+0.6
4,624,934	+	radA	b4389	0.72	+0.0
4,625,079	+	radA	b4389	0.83	+0.6
4,625,167	-	radA	b4389	0.89	+0.3
4,625,167	-	radA	b4389	0.89	+0.1
4,625,167	-	radA	b4389	0.89	+0.2
4,625,168	+	radA	b4389	0.89	-0.6
4,625,300	-				-0.5
4,625,300	-				+0.2
4,625,302	-				-0.2
4,625,311	+				-0.7
4,625,322	-				-0.4
4,625,327	-				-0.3
4,625,389	+				+0.1
4,625,397	-				+0.3
4,625,404	+				+0.3
4,625,404	+				-0.2
4,625,429	+				+0.1
4,625,436	-				+0.1
4,625,436	-				-0.1
4,625,577	+	nadR	b4390	0.19	-0.7
4,625,577	+	nadR	b4390	0.19	-0.9
4,625,597	+	nadR	b4390	0.21	+0.0
4,625,597	+	nadR	b4390	0.21	-0.5
4,625,625	-	nadR	b4390	0.23	-0.1
4,625,625	-	nadR	b4390	0.23	+1.0
4,625,652	-	nadR	b4390	0.25	+0.2
4,625,652	-	nadR	b4390	0.25	-0.6
4,625,652	-	nadR	b4390	0.25	-1.1
4,625,703	-	nadR	b4390	0.30	-0.4
4,625,761	-	nadR	b4390	0.34	-0.2
4,625,774	+	nadR	b4390	0.35	+0.3
4,625,774	+	nadR	b4390	0.35	-1.1
4,625,780	-	nadR	b4390	0.36	-0.6
4,625,780	-	nadR	b4390	0.36	-0.8
4,625,795	+	nadR	b4390	0.37	+0.1
4,625,795	+	nadR	b4390	0.37	-0.3
4,625,803	-	nadR	b4390	0.38	-0.0
4,625,854	+	nadR	b4390	0.42	-0.3
4,625,854	+	nadR	b4390	0.42	-0.5
4,625,857	-	nadR	b4390	0.42	+0.3
4,625,892	+	nadR	b4390	0.45	-0.2
4,625,900	-	nadR	b4390	0.46	-0.2
4,625,920	+	nadR	b4390	0.47	-0.1
4,625,920	+	nadR	b4390	0.47	+0.1
4,625,930	+	nadR	b4390	0.48	+0.8
4,625,951	+	nadR	b4390	0.50	-0.5
4,625,960	-	nadR	b4390	0.50	+0.1
4,626,064	+	nadR	b4390	0.59	+0.4
4,626,064	+	nadR	b4390	0.59	-0.6
4,626,105	-	nadR	b4390	0.62	-0.1
4,626,105	-	nadR	b4390	0.62	-0.3
4,626,143	+	nadR	b4390	0.65	+1.2
4,626,179	+	nadR	b4390	0.68	-0.6
4,626,308	-	nadR	b4390	0.79	-0.2
4,626,400	+	nadR	b4390	0.86	-0.4
4,626,400	+	nadR	b4390	0.86	+0.1
4,626,400	+	nadR	b4390	0.86	-0.3
4,626,428	+	nadR	b4390	0.88	+0.2
4,626,535	+				-0.4
4,626,535	+				-0.2
4,626,540	+				-0.4
4,626,592	-				-1.0
4,626,636	+				+0.1
4,626,655	+				-0.7
4,626,796	+				-0.1
4,626,873	+				+0.1
4,626,876	-				+1.1
4,626,876	-				-0.4
4,626,896	+				-1.0
4,626,952	+				-0.9
4,626,959	-				-0.2
4,626,959	-				+0.4
4,627,007	-				-0.1
4,627,039	+				-0.1
4,627,068	-	yjjK	b4391	0.11	+0.6
4,627,068	-	yjjK	b4391	0.11	-0.3
4,627,070	+	yjjK	b4391	0.12	-0.0
4,627,070	+	yjjK	b4391	0.12	+0.1
4,627,113	+	yjjK	b4391	0.14	-0.1
4,627,130	+	yjjK	b4391	0.15	-0.2
4,627,213	+	yjjK	b4391	0.20	-1.0
4,627,213	+	yjjK	b4391	0.20	-0.1
4,627,213	+	yjjK	b4391	0.20	+0.2
4,627,224	+	yjjK	b4391	0.21	-0.2
4,627,374	+	yjjK	b4391	0.30	-0.3
4,627,374	+	yjjK	b4391	0.30	+0.2
4,627,413	-	yjjK	b4391	0.32	+0.1
4,627,472	+	yjjK	b4391	0.36	-0.6