Strain Fitness in Escherichia coli BW25113 around b3438

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,574,829	-	gntU	b4476	0.81	-3.4
3,574,894	-	gntU	b4476	0.86	+0.0
3,574,965	-				-0.3
3,574,972	+				+0.1
3,574,972	+				+1.4
3,574,980	-				+0.6
3,575,042	+				-0.5
3,575,045	-				+2.6
3,575,083	-				+2.8
3,575,159	+	gntK	b3437	0.13	-1.7
3,575,162	+	gntK	b3437	0.14	-4.7
3,575,162	+	gntK	b3437	0.14	+0.4
3,575,174	+	gntK	b3437	0.16	-3.2
3,575,197	+	gntK	b3437	0.21	-4.6
3,575,314	+	gntK	b3437	0.43	-0.0
3,575,380	-	gntK	b3437	0.55	-4.2
3,575,510	-	gntK	b3437	0.80	-3.5
3,575,510	-	gntK	b3437	0.80	-2.2
3,575,514	+	gntK	b3437	0.81	-2.3
3,575,528	-	gntK	b3437	0.83	+1.4
3,575,560	+	gntK	b3437	0.89	-4.7
3,575,595	+				+1.3
3,575,595	+				-3.4
3,575,608	-				-2.6
3,575,629	-				+0.2
3,575,629	-				+2.6
3,575,666	+				-1.9
3,575,666	+				+4.3
3,575,709	-				+1.0
3,575,720	+				+1.1
3,575,722	+				+0.3
3,575,722	+				-4.6
3,575,728	+				-3.9
3,575,735	-				-3.5
3,575,814	-				+1.8
3,575,869	+	gntR	b3438	0.12	-2.4
3,575,869	+	gntR	b3438	0.12	-1.6
3,575,873	+	gntR	b3438	0.12	-2.0
3,575,905	-	gntR	b3438	0.15	-4.2
3,575,905	-	gntR	b3438	0.15	-2.2
3,575,923	-	gntR	b3438	0.17	+0.6
3,576,111	+	gntR	b3438	0.36	-0.4
3,576,117	+	gntR	b3438	0.36	-3.6
3,576,117	+	gntR	b3438	0.36	+0.5
3,576,117	-	gntR	b3438	0.36	-0.4
3,576,137	-	gntR	b3438	0.38	+0.5
3,576,137	-	gntR	b3438	0.38	+0.3
3,576,199	+	gntR	b3438	0.45	+0.7
3,576,235	+	gntR	b3438	0.48	-1.8
3,576,450	+	gntR	b3438	0.70	-2.5
3,576,538	+	gntR	b3438	0.79	-3.2
3,576,538	+	gntR	b3438	0.79	-2.1
3,576,594	+	gntR	b3438	0.84	-2.9
3,576,594	+	gntR	b3438	0.84	+2.5
3,576,594	+	gntR	b3438	0.84	-2.2
3,576,639	+	gntR	b3438	0.89	-4.7
3,576,703	+				-0.4
3,576,703	+				-3.7
3,576,709	-				-2.5
3,576,709	-				-3.4
3,576,709	-				+0.9
3,576,711	+				-1.0
3,576,715	+				+0.4
3,576,715	+				-0.2
3,576,721	-				+0.9
3,576,721	-				-3.8
3,576,728	+				+2.1
3,576,728	+				-2.6
3,576,798	+				+1.5
3,576,808	+				-3.9
3,576,808	+				+2.0
3,576,862	+				-0.9
3,576,875	-				-2.5
3,576,875	-				+3.7
3,576,875	-				-3.4
3,576,875	-				-1.3
3,576,880	-				-1.3
3,576,900	+				-1.0
3,576,923	-				+2.2
3,576,923	-				-3.7
3,576,959	-				+2.0
3,576,959	-				-2.7
3,577,025	-				-0.9
3,577,025	-				+1.1
3,577,032	-				-1.5
3,577,066	+	yhhW	b3439	0.13	-2.6
3,577,141	+	yhhW	b3439	0.24	+0.6
3,577,188	-	yhhW	b3439	0.31	+0.7
3,577,193	-	yhhW	b3439	0.32	-3.0
3,577,251	-	yhhW	b3439	0.40	-2.7
3,577,252	-	yhhW	b3439	0.40	-0.4
3,577,252	-	yhhW	b3439	0.40	+1.8
3,577,254	+	yhhW	b3439	0.40	-3.9
3,577,262	-	yhhW	b3439	0.42	+1.2
3,577,283	-	yhhW	b3439	0.45	-0.0
3,577,321	-	yhhW	b3439	0.50	-2.7
3,577,348	+	yhhW	b3439	0.54	+0.3
3,577,351	-	yhhW	b3439	0.54	-5.6
3,577,359	+	yhhW	b3439	0.55	-2.2
3,577,380	+	yhhW	b3439	0.58	-1.7
3,577,396	-	yhhW	b3439	0.61	+0.6
3,577,432	-	yhhW	b3439	0.66	+0.1
3,577,433	+	yhhW	b3439	0.66	-2.8
3,577,449	+	yhhW	b3439	0.68	+1.1
3,577,462	-	yhhW	b3439	0.70	-3.9
3,577,510	+	yhhW	b3439	0.77	-0.9
3,577,510	+	yhhW	b3439	0.77	+0.3
3,577,510	-	yhhW	b3439	0.77	+0.1
3,577,535	+	yhhW	b3439	0.81	+0.1
3,577,553	+	yhhW	b3439	0.83	-3.3
3,577,618	-				+2.1
3,577,618	-				-2.7
3,577,619	-				+0.8
3,577,662	-				+0.7
3,577,704	+				-3.3
3,577,704	+				-0.5
3,577,707	-				-0.2
3,577,719	+				-3.5