Strain Fitness in Escherichia coli BW25113 around b4476

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,572,953	-				+2.9
3,572,953	-				+2.3
3,572,958	-				+0.3
3,572,961	+				+0.3
3,572,970	-				-3.1
3,573,020	+				+1.0
3,573,030	-				-4.1
3,573,033	-				+2.3
3,573,033	-				+0.8
3,573,034	+				-2.5
3,573,038	+				-1.4
3,573,056	+				+0.3
3,573,159	-	yhgN	b3434	0.11	-0.7
3,573,159	-	yhgN	b3434	0.11	+0.8
3,573,180	-	yhgN	b3434	0.14	-3.9
3,573,212	-	yhgN	b3434	0.20	+0.3
3,573,237	+	yhgN	b3434	0.24	-3.1
3,573,237	+	yhgN	b3434	0.24	-2.5
3,573,260	-	yhgN	b3434	0.28	-0.8
3,573,305	-	yhgN	b3434	0.36	+1.7
3,573,305	-	yhgN	b3434	0.36	+0.0
3,573,313	+	yhgN	b3434	0.37	-0.8
3,573,323	+	yhgN	b3434	0.39	-1.5
3,573,373	+	yhgN	b3434	0.47	-3.9
3,573,418	-	yhgN	b3434	0.55	-3.2
3,573,468	+	yhgN	b3434	0.63	-3.5
3,573,468	+	yhgN	b3434	0.63	+2.0
3,573,469	-	yhgN	b3434	0.63	+1.1
3,573,471	+	yhgN	b3434	0.63	+1.6
3,573,488	-	yhgN	b3434	0.66	-0.9
3,573,528	-	yhgN	b3434	0.73	-0.4
3,573,569	+	yhgN	b3434	0.80	-0.7
3,573,569	+	yhgN	b3434	0.80	+0.8
3,573,582	+	yhgN	b3434	0.82	-3.2
3,573,595	-	yhgN	b3434	0.84	+1.4
3,573,595	-	yhgN	b3434	0.84	+1.9
3,573,643	+				-4.0
3,573,643	+				+1.2
3,573,652	+				+2.9
3,573,683	+				+0.0
3,573,708	+				+0.8
3,573,710	+				+1.0
3,573,758	-				+1.0
3,573,782	+				-2.9
3,573,810	-				+1.0
3,573,848	-				-1.7
3,573,848	-				-3.4
3,573,957	-	gntU	b4476	0.16	-3.1
3,573,967	-	gntU	b4476	0.17	+1.4
3,574,017	+	gntU	b4476	0.20	-0.8
3,574,017	+	gntU	b4476	0.20	+0.6
3,574,017	+	gntU	b4476	0.20	-3.5
3,574,019	+	gntU	b4476	0.21	-4.3
3,574,019	+	gntU	b4476	0.21	-3.8
3,574,042	-	gntU	b4476	0.22	-0.8
3,574,107	+	gntU	b4476	0.27	-1.7
3,574,108	-	gntU	b4476	0.27	+0.7
3,574,133	-	gntU	b4476	0.29	+0.9
3,574,154	-	gntU	b4476	0.31	+0.3
3,574,154	-	gntU	b4476	0.31	+3.0
3,574,187	+	gntU	b4476	0.33	-0.7
3,574,274	+	gntU	b4476	0.40	+0.3
3,574,282	+	gntU	b4476	0.40	-0.7
3,574,284	+	gntU	b4476	0.40	-0.3
3,574,326	-	gntU	b4476	0.43	-1.0
3,574,356	+	gntU	b4476	0.46	+1.6
3,574,376	+	gntU	b4476	0.47	-3.2
3,574,428	+	gntU	b4476	0.51	+2.8
3,574,428	+	gntU	b4476	0.51	-4.1
3,574,449	-	gntU	b4476	0.53	-4.4
3,574,466	+	gntU	b4476	0.54	-2.6
3,574,466	+	gntU	b4476	0.54	+1.8
3,574,487	+	gntU	b4476	0.55	-1.6
3,574,487	+	gntU	b4476	0.55	+2.7
3,574,490	-	gntU	b4476	0.56	-0.3
3,574,490	-	gntU	b4476	0.56	-0.6
3,574,502	-	gntU	b4476	0.57	-2.6
3,574,502	-	gntU	b4476	0.57	-3.7
3,574,528	+	gntU	b4476	0.58	+2.8
3,574,528	+	gntU	b4476	0.58	+1.8
3,574,547	+	gntU	b4476	0.60	-1.2
3,574,595	+	gntU	b4476	0.63	-0.2
3,574,598	-	gntU	b4476	0.64	-0.1
3,574,717	+	gntU	b4476	0.73	-1.6
3,574,717	+	gntU	b4476	0.73	+3.4
3,574,742	-	gntU	b4476	0.74	+0.7
3,574,750	+	gntU	b4476	0.75	-2.4
3,574,829	-	gntU	b4476	0.81	-3.4
3,574,894	-	gntU	b4476	0.86	+0.0
3,574,965	-				-0.3
3,574,972	+				+0.1
3,574,972	+				+1.4
3,574,980	-				+0.6
3,575,042	+				-0.5
3,575,045	-				+2.6
3,575,083	-				+2.8
3,575,159	+	gntK	b3437	0.13	-1.7
3,575,162	+	gntK	b3437	0.14	-4.7
3,575,162	+	gntK	b3437	0.14	+0.4
3,575,174	+	gntK	b3437	0.16	-3.2
3,575,197	+	gntK	b3437	0.21	-4.6
3,575,314	+	gntK	b3437	0.43	-0.0
3,575,380	-	gntK	b3437	0.55	-4.2
3,575,510	-	gntK	b3437	0.80	-3.5
3,575,510	-	gntK	b3437	0.80	-2.2
3,575,514	+	gntK	b3437	0.81	-2.3
3,575,528	-	gntK	b3437	0.83	+1.4
3,575,560	+	gntK	b3437	0.89	-4.7
3,575,595	+				+1.3
3,575,595	+				-3.4
3,575,608	-				-2.6
3,575,629	-				+0.2
3,575,629	-				+2.6
3,575,666	+				-1.9
3,575,666	+				+4.3
3,575,709	-				+1.0
3,575,720	+				+1.1
3,575,722	+				+0.3
3,575,722	+				-4.6
3,575,728	+				-3.9
3,575,735	-				-3.5
3,575,814	-				+1.8
3,575,869	+	gntR	b3438	0.12	-2.4
3,575,869	+	gntR	b3438	0.12	-1.6
3,575,873	+	gntR	b3438	0.12	-2.0
3,575,905	-	gntR	b3438	0.15	-4.2
3,575,905	-	gntR	b3438	0.15	-2.2
3,575,923	-	gntR	b3438	0.17	+0.6