Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjJ and ybjK are separated by 83 nucleotides ybjK and rybB are separated by 16 nucleotides rybB and ybjL are separated by 79 nucleotides
b0845: ybjJ - predicted transporter (NCBI), at 885,354 to 886,562
ybjJ
b0846: ybjK - predicted DNA-binding transcriptional regulator (NCBI), at 886,646 to 887,182
ybjK
b4417: rybB - unknown RNA (NCBI), at 887,199 to 887,277
rybB
b0847: ybjL - hypothetical protein (NCBI), at 887,357 to 889,042
ybjL
Position (kb) 887
888 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 886.291 kb on + strand, within ybjJ at 886.291 kb on + strand, within ybjJ at 886.313 kb on + strand, within ybjJ at 886.363 kb on + strand, within ybjJ at 886.395 kb on - strand, within ybjJ at 886.430 kb on + strand, within ybjJ at 886.457 kb on + strand at 886.522 kb on - strand at 886.522 kb on - strand at 886.814 kb on - strand, within ybjK at 886.815 kb on - strand, within ybjK at 886.815 kb on - strand, within ybjK at 886.822 kb on + strand, within ybjK at 886.822 kb on + strand, within ybjK at 886.840 kb on + strand, within ybjK at 886.887 kb on - strand, within ybjK at 886.887 kb on - strand, within ybjK at 886.926 kb on - strand, within ybjK at 886.977 kb on - strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.169 kb on - strand at 887.169 kb on - strand at 887.170 kb on - strand at 887.286 kb on - strand at 887.292 kb on + strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.418 kb on - strand at 887.441 kb on + strand at 887.442 kb on - strand at 887.449 kb on - strand at 887.449 kb on - strand at 887.515 kb on + strand at 887.554 kb on + strand, within ybjL at 887.671 kb on + strand, within ybjL at 887.715 kb on + strand, within ybjL at 887.715 kb on + strand, within ybjL at 887.717 kb on + strand, within ybjL at 887.727 kb on - strand, within ybjL at 887.765 kb on + strand, within ybjL at 887.797 kb on + strand, within ybjL at 887.797 kb on + strand, within ybjL at 887.856 kb on + strand, within ybjL at 887.906 kb on - strand, within ybjL at 887.906 kb on - strand, within ybjL at 888.021 kb on + strand, within ybjL at 888.056 kb on - strand, within ybjL at 888.056 kb on - strand, within ybjL at 888.143 kb on - strand, within ybjL at 888.211 kb on - strand, within ybjL at 888.211 kb on - strand, within ybjL
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 886,291 + ybjJ b0845 0.78 +1.2 886,291 + ybjJ b0845 0.78 +2.9 886,313 + ybjJ b0845 0.79 +0.2 886,363 + ybjJ b0845 0.83 +0.0 886,395 - ybjJ b0845 0.86 +0.1 886,430 + ybjJ b0845 0.89 -4.0 886,457 + -0.3 886,522 - +1.9 886,522 - -1.9 886,814 - ybjK b0846 0.31 -0.4 886,815 - ybjK b0846 0.31 -3.0 886,815 - ybjK b0846 0.31 -2.2 886,822 + ybjK b0846 0.33 -5.3 886,822 + ybjK b0846 0.33 -4.4 886,840 + ybjK b0846 0.36 -0.8 886,887 - ybjK b0846 0.45 +2.5 886,887 - ybjK b0846 0.45 +0.1 886,926 - ybjK b0846 0.52 -0.6 886,977 - ybjK b0846 0.62 -0.4 887,034 + ybjK b0846 0.72 -2.5 887,034 + ybjK b0846 0.72 -3.5 887,034 + ybjK b0846 0.72 -0.2 887,169 - -1.5 887,169 - -1.6 887,170 - +0.5 887,286 - -0.8 887,292 + +2.5 887,399 - +0.6 887,399 - -1.5 887,399 - +1.7 887,418 - +0.8 887,441 + -0.1 887,442 - +0.2 887,449 - -2.2 887,449 - +1.1 887,515 + -0.5 887,554 + ybjL b0847 0.12 -0.0 887,671 + ybjL b0847 0.19 -1.0 887,715 + ybjL b0847 0.21 +2.3 887,715 + ybjL b0847 0.21 -2.6 887,717 + ybjL b0847 0.21 +0.4 887,727 - ybjL b0847 0.22 -0.6 887,765 + ybjL b0847 0.24 -0.2 887,797 + ybjL b0847 0.26 +0.0 887,797 + ybjL b0847 0.26 -0.5 887,856 + ybjL b0847 0.30 +1.6 887,906 - ybjL b0847 0.33 +1.1 887,906 - ybjL b0847 0.33 +0.4 888,021 + ybjL b0847 0.39 -2.7 888,056 - ybjL b0847 0.41 -2.3 888,056 - ybjL b0847 0.41 +0.0 888,143 - ybjL b0847 0.47 -0.6 888,211 - ybjL b0847 0.51 -0.4 888,211 - ybjL b0847 0.51 +0.6
Or see this region's nucleotide sequence