Strain Fitness in Escherichia coli BW25113 around b3839

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
4,019,914	+				-0.9
4,019,914	+				+1.3
4,019,957	-				+0.3
4,019,960	-				-0.9
4,019,972	-				-4.2
4,019,975	+				+0.5
4,019,975	+				-0.7
4,019,981	+				+0.8
4,019,983	-				-5.7
4,019,991	+				-1.3
4,020,007	-	b3836	b3836	0.14	-2.7
4,020,011	+	b3836	b3836	0.16	+1.0
4,020,014	+	b3836	b3836	0.17	-1.4
4,020,181	+	b3836	b3836	0.79	+0.6
4,020,182	+	b3836	b3836	0.79	-3.0
4,020,182	+	b3836	b3836	0.79	-3.2
4,020,197	+	b3836	b3836	0.85	-2.7
4,020,224	-				-1.2
4,020,226	-				+0.1
4,020,229	+				+0.3
4,020,232	+				+2.1
4,020,239	-				+0.7
4,020,262	-				-2.2
4,020,276	+				-4.9
4,020,282	-				-3.8
4,020,353	-	tatB	b3838	0.22	-5.0
4,020,357	+	tatB	b3838	0.22	-2.9
4,020,357	+	tatB	b3838	0.22	-3.2
4,020,366	+	tatB	b3838	0.24	-3.8
4,020,366	+	tatB	b3838	0.24	-4.0
4,020,366	+	tatB	b3838	0.24	-3.0
4,020,366	+	tatB	b3838	0.24	-4.0
4,020,368	+	tatB	b3838	0.25	-5.0
4,020,376	+	tatB	b3838	0.26	-4.1
4,020,381	+	tatB	b3838	0.27	-2.9
4,020,381	+	tatB	b3838	0.27	-3.9
4,020,381	+	tatB	b3838	0.27	-2.1
4,020,381	+	tatB	b3838	0.27	-2.5
4,020,384	-	tatB	b3838	0.28	-3.1
4,020,423	-	tatB	b3838	0.35	-2.8
4,020,423	-	tatB	b3838	0.35	-2.5
4,020,425	+	tatB	b3838	0.36	-4.4
4,020,453	+	tatB	b3838	0.41	-4.0
4,020,490	+	tatB	b3838	0.48	-3.7
4,020,491	+	tatB	b3838	0.48	-3.3
4,020,491	+	tatB	b3838	0.48	-5.0
4,020,495	+	tatB	b3838	0.49	-3.9
4,020,495	+	tatB	b3838	0.49	-4.4
4,020,522	+	tatB	b3838	0.54	-5.1
4,020,527	-	tatB	b3838	0.55	-3.7
4,020,539	+	tatB	b3838	0.58	-5.9
4,020,572	+	tatB	b3838	0.64	-5.3
4,020,579	-	tatB	b3838	0.66	-7.0
4,020,596	+	tatB	b3838	0.69	+0.9
4,020,640	-	tatB	b3838	0.77	-4.5
4,020,645	-	tatB	b3838	0.78	-4.3
4,020,686	+	tatB	b3838	0.86	-1.2
4,020,727	-				-3.8
4,020,750	+				+3.3
4,020,771	-				-2.0
4,020,777	-				-5.9
4,020,782	+				-4.9
4,020,796	+				-1.9
4,020,804	-				-3.0
4,020,814	-				-3.7
4,020,814	-				-4.2
4,020,814	-				-2.8
4,020,824	-				-5.6
4,020,839	+	tatC	b3839	0.10	-3.5
4,020,845	+	tatC	b3839	0.11	-3.7
4,020,851	-	tatC	b3839	0.12	-3.8
4,020,881	+	tatC	b3839	0.16	-2.9
4,020,891	+	tatC	b3839	0.17	-2.8
4,020,891	+	tatC	b3839	0.17	-1.0
4,020,891	+	tatC	b3839	0.17	-1.8
4,020,891	-	tatC	b3839	0.17	-1.8
4,020,902	-	tatC	b3839	0.18	-2.7
4,020,910	+	tatC	b3839	0.19	-3.8
4,020,910	+	tatC	b3839	0.19	-5.0
4,020,933	-	tatC	b3839	0.22	-4.0
4,020,990	-	tatC	b3839	0.30	-6.6
4,021,018	+	tatC	b3839	0.33	-4.5
4,021,028	+	tatC	b3839	0.35	-5.0
4,021,028	+	tatC	b3839	0.35	-3.7
4,021,030	-	tatC	b3839	0.35	-4.0
4,021,030	-	tatC	b3839	0.35	-3.9
4,021,045	+	tatC	b3839	0.37	-1.3
4,021,053	+	tatC	b3839	0.38	-4.0
4,021,053	+	tatC	b3839	0.38	-3.9
4,021,053	+	tatC	b3839	0.38	-5.3
4,021,055	+	tatC	b3839	0.38	-5.2
4,021,055	+	tatC	b3839	0.38	-3.6
4,021,055	+	tatC	b3839	0.38	-2.8
4,021,063	-	tatC	b3839	0.39	-4.2
4,021,063	-	tatC	b3839	0.39	-2.7
4,021,063	-	tatC	b3839	0.39	-3.8
4,021,063	-	tatC	b3839	0.39	-3.4
4,021,070	-	tatC	b3839	0.40	-5.0
4,021,078	-	tatC	b3839	0.41	-3.2
4,021,109	-	tatC	b3839	0.45	-3.7
4,021,167	+	tatC	b3839	0.53	-3.0
4,021,167	+	tatC	b3839	0.53	-2.4
4,021,169	+	tatC	b3839	0.53	-3.2
4,021,169	+	tatC	b3839	0.53	-5.5
4,021,177	-	tatC	b3839	0.54	-3.5
4,021,205	-	tatC	b3839	0.57	-2.5
4,021,228	+	tatC	b3839	0.60	-1.8
4,021,228	+	tatC	b3839	0.60	-2.5
4,021,241	+	tatC	b3839	0.62	-2.1
4,021,241	+	tatC	b3839	0.62	-3.0
4,021,261	+	tatC	b3839	0.65	-4.4
4,021,269	-	tatC	b3839	0.66	-3.8
4,021,269	-	tatC	b3839	0.66	-2.4
4,021,269	-	tatC	b3839	0.66	-3.1
4,021,279	-	tatC	b3839	0.67	-3.2
4,021,305	-	tatC	b3839	0.70	-3.4
4,021,305	-	tatC	b3839	0.70	-2.7
4,021,344	+	tatC	b3839	0.75	-5.6
4,021,418	+	tatC	b3839	0.85	-3.8
4,021,419	+	tatC	b3839	0.85	-3.9
4,021,443	+	tatC	b3839	0.88	-3.4
4,021,470	+				+0.9
4,021,489	-				-2.2
4,021,555	-				-3.7
4,021,555	-				+1.4
4,021,568	+				+2.4
4,021,568	+				+0.9
4,021,570	+				-0.8
4,021,647	+				+0.1
4,021,666	-				-0.3
4,021,666	-	tatD	b4483	0.11	+1.0
4,021,667	+	tatD	b4483	0.11	+1.8
4,021,670	-	tatD	b4483	0.12	+0.7
4,021,670	-	tatD	b4483	0.12	+2.3
4,021,680	-	tatD	b4483	0.13	+1.2
4,021,683	+	tatD	b4483	0.14	+0.6
4,021,683	+	tatD	b4483	0.14	-2.7
4,021,683	+	tatD	b4483	0.14	-1.2
4,021,683	+	tatD	b4483	0.14	-0.9
4,021,691	-	tatD	b4483	0.15	-0.8
4,021,691	-	tatD	b4483	0.15	-1.0
4,021,691	-	tatD	b4483	0.15	-1.4
4,021,718	-	tatD	b4483	0.18	+2.2
4,021,718	-	tatD	b4483	0.18	-0.7
4,021,733	-	tatD	b4483	0.20	+0.1
4,021,733	-	tatD	b4483	0.20	+1.5
4,021,768	+	tatD	b4483	0.24	-2.0
4,021,768	+	tatD	b4483	0.24	+2.3
4,021,778	-	tatD	b4483	0.26	+2.4
4,021,783	-	tatD	b4483	0.26	-1.8
4,021,825	+	tatD	b4483	0.32	-0.2
4,021,825	+	tatD	b4483	0.32	+0.6
4,021,923	-	tatD	b4483	0.44	+2.1
4,021,931	+	tatD	b4483	0.45	+2.8
4,021,931	+	tatD	b4483	0.45	-0.4
4,021,959	+	tatD	b4483	0.49	+0.7
4,021,959	+	tatD	b4483	0.49	+0.6
4,021,978	+	tatD	b4483	0.51	-3.7
4,021,978	+	tatD	b4483	0.51	+1.0
4,021,978	+	tatD	b4483	0.51	-0.2
4,021,986	-	tatD	b4483	0.52	-1.6
4,021,986	-	tatD	b4483	0.52	+0.1
4,021,986	-	tatD	b4483	0.52	-3.5
4,021,986	-	tatD	b4483	0.52	-1.4
4,021,994	-	tatD	b4483	0.53	-3.7
4,022,055	+	tatD	b4483	0.61	+1.8
4,022,055	+	tatD	b4483	0.61	+1.1
4,022,056	-	tatD	b4483	0.61	+0.5
4,022,124	+	tatD	b4483	0.70	+2.2
4,022,191	+	tatD	b4483	0.78	+0.5
4,022,223	+	tatD	b4483	0.83	+0.7
4,022,252	-	tatD	b4483	0.86	+1.0
4,022,261	+	tatD	b4483	0.87	-2.6
4,022,271	+	tatD	b4483	0.89	-1.1
4,022,271	+	tatD	b4483	0.89	+1.5
4,022,271	+	tatD	b4483	0.89	+1.3
4,022,271	+	tatD	b4483	0.89	+0.9
4,022,284	+				+1.0
4,022,284	+				-2.7
4,022,284	+				-4.5
4,022,284	-				+0.2
4,022,293	+				-1.2
4,022,294	+				-5.3
4,022,306	-				+0.8
4,022,306	-				+2.2
4,022,327	-				-0.1
4,022,339	-				+0.4
4,022,353	+				+0.9
4,022,353	+				+3.7
4,022,376	-				-3.1
4,022,376	-				-0.0
4,022,379	+				-3.5
4,022,379	+				+0.6
4,022,387	-				+1.1
4,022,389	-				+0.9
4,022,399	-				+1.3
4,022,424	+	rfaH	b3842	0.14	-4.1
4,022,424	+	rfaH	b3842	0.14	-3.6
4,022,431	-	rfaH	b3842	0.15	-1.6
4,022,434	+	rfaH	b3842	0.16	-2.4
4,022,437	-	rfaH	b3842	0.17	-2.6
4,022,495	-	rfaH	b3842	0.28	-3.2
4,022,500	-	rfaH	b3842	0.29	-2.1
4,022,500	-	rfaH	b3842	0.29	-2.5