Strain Fitness in Escherichia coli BW25113 around b3739

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,919,227	-				+0.1
3,919,248	-				-2.8
3,919,265	-				+0.8
3,919,265	-				-2.9
3,920,048	-				-1.3
3,920,063	-				+1.5
3,920,063	-				-2.0
3,920,119	-				-3.5
3,920,212	-	atpI	b3739	0.34	+2.6
3,920,212	-	atpI	b3739	0.34	+1.3
3,920,223	-	atpI	b3739	0.37	-0.4
3,920,270	-	atpI	b3739	0.49	-2.2
3,920,270	-	atpI	b3739	0.49	-1.4
3,920,362	-	atpI	b3739	0.73	-0.6
3,920,362	-	atpI	b3739	0.73	+2.4
3,920,362	-	atpI	b3739	0.73	+2.5
3,920,365	-	atpI	b3739	0.74	+3.7
3,920,375	-	atpI	b3739	0.77	+1.6
3,920,408	-	atpI	b3739	0.85	+1.0
3,920,410	-	atpI	b3739	0.86	+0.3
3,920,412	-	atpI	b3739	0.86	+0.3
3,920,425	-	atpI	b3739	0.90	-1.2
3,920,462	-				+0.1
3,920,488	-				+1.1
3,920,511	-				+0.9
3,920,514	-				-1.3
3,920,533	-				+2.2
3,920,538	-				-2.1
3,920,558	-				+0.2
3,920,561	-				-0.3
3,920,594	-				-2.6
3,920,594	-				+3.6
3,920,638	-				-3.7
3,920,638	-				-1.1
3,920,638	-				-3.0
3,920,638	-				-0.1
3,920,641	+				+1.1
3,920,649	-				+1.3
3,920,651	+				-2.4
3,920,658	-				-0.1
3,920,675	+				-0.6
3,920,675	+				-3.4
3,920,696	-				+1.9
3,920,696	-				+1.9
3,920,698	+				-0.8
3,920,699	+				-4.3
3,920,699	+				-3.9
3,920,707	+				+0.8
3,920,707	-				-1.5
3,920,717	+				-2.3
3,920,722	+				+1.4
3,920,722	+				+1.8
3,920,722	+				+0.4
3,920,725	-				+1.1
3,920,726	-				-2.2
3,920,726	-				-2.3
3,920,729	-				-1.5
3,920,729	-				+5.3
3,920,751	-				+2.9
3,920,768	+				-1.5
3,920,773	+				+1.7
3,920,867	+				+0.9
3,920,877	+				-4.1
3,920,885	-				-1.9
3,920,885	-				+1.7
3,920,920	-				-5.5
3,920,920	-				+0.3
3,920,963	+				-1.6
3,920,963	+				+0.4
3,920,982	-				+0.1
3,920,985	+				-1.0
3,920,992	+				-2.1
3,920,997	+				-2.7
3,920,997	+				+0.9
3,921,014	-				-2.8
3,921,014	-				+1.3
3,921,014	-				-3.7
3,921,014	-				-2.7
3,921,036	+				-0.1
3,921,039	+				-2.6
3,921,039	+				+5.0
3,921,047	-				+0.7
3,921,101	-				-3.0
3,921,113	-				-2.0
3,921,113	-				-1.4
3,921,122	+				-0.5
3,921,122	+				-4.1
3,921,125	-				+0.9
3,921,125	-				-3.4
3,921,125	-				-3.7
3,921,225	-	gidB	b3740	0.23	-3.3
3,921,240	+	gidB	b3740	0.26	+0.9
3,921,252	-	gidB	b3740	0.28	+0.6
3,921,255	+	gidB	b3740	0.28	-1.3
3,921,263	-	gidB	b3740	0.29	+0.9
3,921,265	-	gidB	b3740	0.30	-1.9
3,921,310	-	gidB	b3740	0.37	+0.2
3,921,336	-	gidB	b3740	0.41	-2.5
3,921,336	-	gidB	b3740	0.41	+1.7
3,921,336	-	gidB	b3740	0.41	+2.9
3,921,338	+	gidB	b3740	0.41	+0.8
3,921,357	-	gidB	b3740	0.44	+3.3
3,921,390	-	gidB	b3740	0.50	-1.6
3,921,406	+	gidB	b3740	0.52	-0.9
3,921,406	+	gidB	b3740	0.52	-3.0
3,921,414	+	gidB	b3740	0.54	-3.0
3,921,414	+	gidB	b3740	0.54	-1.2
3,921,424	-	gidB	b3740	0.55	-0.5
3,921,424	-	gidB	b3740	0.55	-1.2
3,921,434	-	gidB	b3740	0.57	-2.1
3,921,434	-	gidB	b3740	0.57	-2.8
3,921,445	+	gidB	b3740	0.58	-1.8
3,921,450	+	gidB	b3740	0.59	-2.4