Strain Fitness in Escherichia coli BW25113 around b3467

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,602,314	+				-2.2
3,602,314	+				-2.9
3,602,321	-				+1.4
3,602,324	-				-2.8
3,602,358	+				-1.2
3,602,358	+				+0.1
3,602,377	+				+0.9
3,602,377	+				-2.7
3,602,509	-	yhhF	b3465	0.16	-2.0
3,602,509	-	yhhF	b3465	0.16	-1.0
3,602,519	-	yhhF	b3465	0.17	+0.5
3,602,519	-	yhhF	b3465	0.17	+0.4
3,602,522	-	yhhF	b3465	0.18	-3.2
3,602,522	-	yhhF	b3465	0.18	-2.4
3,602,522	-	yhhF	b3465	0.18	+3.7
3,602,592	-	yhhF	b3465	0.29	-0.7
3,602,621	-				+1.0
3,602,634	-	yhhF	b3465	0.37	-3.1
3,602,713	-	yhhF	b3465	0.50	-1.3
3,602,736	-	yhhF	b3465	0.54	+0.1
3,602,773	-	yhhF	b3465	0.60	-1.9
3,602,780	-	yhhF	b3465	0.61	+2.3
3,602,780	-	yhhF	b3465	0.61	+0.7
3,602,783	-	yhhF	b3465	0.61	-3.3
3,602,882	-	yhhF	b3465	0.78	-3.5
3,602,907	+	yhhF	b3465	0.82	+2.1
3,602,947	-	yhhF	b3465	0.89	+1.2
3,602,992	-				+2.4
3,602,993	+				+1.7
3,603,015	-				-1.8
3,603,062	-	yhhL	b3466	0.22	-1.4
3,603,062	-	yhhL	b3466	0.22	-0.8
3,603,065	+	yhhL	b3466	0.23	-3.5
3,603,065	+	yhhL	b3466	0.23	+0.3
3,603,083	-	yhhL	b3466	0.30	-1.9
3,603,134	+	yhhL	b3466	0.49	-3.2
3,603,134	+	yhhL	b3466	0.49	+0.5
3,603,135	+	yhhL	b3466	0.49	-0.2
3,603,135	+	yhhL	b3466	0.49	+1.6
3,603,143	-	yhhL	b3466	0.52	+0.1
3,603,159	-	yhhL	b3466	0.58	+2.0
3,603,225	+	yhhL	b3466	0.83	-4.5
3,603,247	-				-3.4
3,603,279	-				+0.1
3,603,279	-				+0.8
3,603,314	-	yhhM	b3467	0.11	-0.3
3,603,314	-	yhhM	b3467	0.11	-0.7
3,603,316	+	yhhM	b3467	0.12	+0.7
3,603,316	+	yhhM	b3467	0.12	+1.0
3,603,339	+	yhhM	b3467	0.18	-2.6
3,603,352	+	yhhM	b3467	0.22	-0.7
3,603,357	+	yhhM	b3467	0.23	+1.8
3,603,360	-	yhhM	b3467	0.24	+1.1
3,603,410	-	yhhM	b3467	0.38	+1.9
3,603,420	+	yhhM	b3467	0.41	+0.9
3,603,423	+	yhhM	b3467	0.41	+1.6
3,603,435	-	yhhM	b3467	0.45	+1.0
3,603,470	+	yhhM	b3467	0.54	+0.6
3,603,678	+				-1.8
3,603,726	+				+1.3
3,603,776	+				-0.7
3,603,812	+				+2.5
3,603,825	+				+0.2
3,603,825	+				+1.3
3,603,945	+	yhhN	b3468	0.27	-3.4
3,603,945	+	yhhN	b3468	0.27	+0.6
3,603,955	-	yhhN	b3468	0.29	+1.0
3,603,960	+	yhhN	b3468	0.30	+2.5
3,603,960	+	yhhN	b3468	0.30	-3.5
3,603,968	-	yhhN	b3468	0.31	+1.3
3,603,980	-	yhhN	b3468	0.33	-3.1
3,603,980	-	yhhN	b3468	0.33	-0.5
3,603,996	+	yhhN	b3468	0.35	+0.4
3,603,996	+	yhhN	b3468	0.35	-0.8
3,604,037	+	yhhN	b3468	0.42	-3.7
3,604,037	+	yhhN	b3468	0.42	-2.4
3,604,037	+	yhhN	b3468	0.42	-3.0
3,604,037	+	yhhN	b3468	0.42	-2.7
3,604,037	+	yhhN	b3468	0.42	-3.4
3,604,045	-	yhhN	b3468	0.43	-1.2
3,604,045	-	yhhN	b3468	0.43	-2.3
3,604,045	-	yhhN	b3468	0.43	+1.0
3,604,071	+	yhhN	b3468	0.47	-3.0
3,604,071	+	yhhN	b3468	0.47	+1.9
3,604,087	+	yhhN	b3468	0.50	-0.3
3,604,087	+	yhhN	b3468	0.50	+0.8
3,604,087	+	yhhN	b3468	0.50	-1.0
3,604,087	+	yhhN	b3468	0.50	+1.3
3,604,092	-	yhhN	b3468	0.51	-3.6
3,604,092	-	yhhN	b3468	0.51	+2.2
3,604,095	-	yhhN	b3468	0.51	-0.4
3,604,095	-	yhhN	b3468	0.51	-0.5
3,604,095	-	yhhN	b3468	0.51	-3.5
3,604,095	-	yhhN	b3468	0.51	-3.6
3,604,095	-	yhhN	b3468	0.51	+2.8
3,604,095	-	yhhN	b3468	0.51	+0.2
3,604,095	-	yhhN	b3468	0.51	-2.7
3,604,107	+	yhhN	b3468	0.53	-0.3
3,604,107	+	yhhN	b3468	0.53	+0.9
3,604,119	+	yhhN	b3468	0.55	-1.1
3,604,157	-	yhhN	b3468	0.61	-1.1
3,604,167	+	yhhN	b3468	0.63	+0.0
3,604,167	+	yhhN	b3468	0.63	+2.1
3,604,170	-	yhhN	b3468	0.63	+0.7
3,604,170	-	yhhN	b3468	0.63	+0.7
3,604,193	+	yhhN	b3468	0.67	+0.5
3,604,193	+	yhhN	b3468	0.67	+0.7
3,604,193	+	yhhN	b3468	0.67	-0.1
3,604,199	-	yhhN	b3468	0.68	+2.4
3,604,229	-	yhhN	b3468	0.73	-1.8
3,604,229	-	yhhN	b3468	0.73	+1.2
3,604,360	-				+0.0
3,604,387	+				-4.9
3,604,392	-				-3.4
3,604,392	-				+1.3
3,604,423	-				-2.5
3,604,549	+				-2.2
3,604,586	+				-1.2
3,604,594	-				-2.3
3,604,594	-				-1.7
3,604,594	-				-2.4