Strain Fitness in Escherichia coli BW25113 around b3404

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,531,647	+	pck	b3403	0.50	+0.7
3,531,662	-	pck	b3403	0.51	-0.6
3,531,662	-	pck	b3403	0.51	+1.1
3,531,747	-	pck	b3403	0.56	-2.7
3,531,799	-	pck	b3403	0.59	-0.5
3,531,840	+	pck	b3403	0.62	+1.0
3,531,848	-	pck	b3403	0.62	+1.0
3,531,868	+	pck	b3403	0.63	+1.0
3,531,985	+	pck	b3403	0.71	-0.1
3,532,017	+	pck	b3403	0.73	-0.2
3,532,027	+	pck	b3403	0.73	-3.6
3,532,050	+	pck	b3403	0.75	-3.1
3,532,092	+	pck	b3403	0.77	-1.3
3,532,092	+	pck	b3403	0.77	-3.7
3,532,099	+	pck	b3403	0.78	-2.7
3,532,122	-	pck	b3403	0.79	+1.2
3,532,137	-	pck	b3403	0.80	+1.0
3,532,144	+	pck	b3403	0.80	-4.3
3,532,148	-	pck	b3403	0.81	+0.3
3,532,153	+	pck	b3403	0.81	-3.5
3,532,171	-	pck	b3403	0.82	-1.1
3,532,178	+	pck	b3403	0.82	+1.9
3,532,178	+	pck	b3403	0.82	+2.5
3,532,225	+	pck	b3403	0.85	-1.0
3,532,233	-	pck	b3403	0.86	+1.1
3,532,235	+	pck	b3403	0.86	-0.9
3,532,270	-	pck	b3403	0.88	+1.7
3,532,270	-	pck	b3403	0.88	-3.4
3,532,277	-	pck	b3403	0.89	+1.1
3,532,277	-	pck	b3403	0.89	-0.3
3,532,325	-				-4.2
3,532,325	-				+2.4
3,532,327	+				-0.3
3,532,329	-				-0.5
3,532,335	-				+2.7
3,532,335	-				-4.0
3,532,335	-				-0.1
3,532,411	-				-3.2
3,532,434	+				+0.8
3,532,434	+				-2.4
3,532,446	-				-0.6
3,532,559	-				-3.7
3,532,565	-				+0.8
3,532,630	-				-1.0
3,532,646	-				-3.6
3,532,646	-				-3.4
3,532,671	-				-3.8
3,532,671	-				-1.7
3,532,676	+	envZ	b3404	0.10	-1.6
3,532,676	+	envZ	b3404	0.10	-1.9
3,532,676	+	envZ	b3404	0.10	-2.1
3,532,676	+	envZ	b3404	0.10	-2.9
3,532,689	+	envZ	b3404	0.11	-4.5
3,532,733	-	envZ	b3404	0.14	-3.2
3,532,735	+	envZ	b3404	0.15	-4.2
3,532,736	+	envZ	b3404	0.15	-4.9
3,532,737	+	envZ	b3404	0.15	-2.0
3,532,777	-	envZ	b3404	0.18	-3.8
3,532,804	-	envZ	b3404	0.20	-4.2
3,532,835	+	envZ	b3404	0.22	-1.2
3,532,848	-	envZ	b3404	0.23	-2.7
3,532,853	+	envZ	b3404	0.23	-3.9
3,532,870	-	envZ	b3404	0.25	-2.4
3,532,870	-	envZ	b3404	0.25	-3.1
3,532,888	-	envZ	b3404	0.26	-2.1
3,532,919	+	envZ	b3404	0.28	-3.0
3,532,970	-	envZ	b3404	0.32	-3.8
3,532,973	+	envZ	b3404	0.32	-4.9
3,533,031	-	envZ	b3404	0.36	-3.2
3,533,093	+	envZ	b3404	0.41	-5.5
3,533,139	-	envZ	b3404	0.44	-5.0
3,533,159	+	envZ	b3404	0.46	-1.9
3,533,203	+	envZ	b3404	0.49	-5.9
3,533,264	+	envZ	b3404	0.54	-6.9
3,533,306	+	envZ	b3404	0.57	-3.6
3,533,314	-	envZ	b3404	0.57	-3.8
3,533,326	-	envZ	b3404	0.58	-5.0
3,533,342	+	envZ	b3404	0.59	-4.5
3,533,350	-	envZ	b3404	0.60	+0.9
3,533,350	-	envZ	b3404	0.60	-2.7
3,533,360	-	envZ	b3404	0.61	-4.8
3,533,360	-	envZ	b3404	0.61	-4.6
3,533,398	+	envZ	b3404	0.64	-4.2
3,533,400	+	envZ	b3404	0.64	-3.5
3,533,406	-	envZ	b3404	0.64	-4.3
3,533,458	+	envZ	b3404	0.68	-1.7
3,533,460	+	envZ	b3404	0.68	-5.6
3,533,492	+	envZ	b3404	0.71	-4.0
3,533,519	+	envZ	b3404	0.73	-3.6
3,533,523	-	envZ	b3404	0.73	-4.3
3,533,571	-	envZ	b3404	0.76	-5.7
3,533,571	-	envZ	b3404	0.76	-5.8
3,533,572	-	envZ	b3404	0.76	-5.9
3,533,599	-	envZ	b3404	0.78	-4.1
3,533,629	-	envZ	b3404	0.81	-0.3
3,533,676	+	envZ	b3404	0.84	-3.3
3,533,693	+	envZ	b3404	0.85	-2.0
3,533,723	+	envZ	b3404	0.88	-5.5
3,533,832	+				+1.0
3,533,853	-				-1.2
3,533,853	-				-2.2
3,533,871	-				-4.2
3,533,892	+				-4.4
3,533,900	-				-2.1
3,533,900	-				+0.8
3,533,900	-				-3.9
3,533,900	-				-2.9
3,533,907	+				-3.9
3,533,926	+				-2.9
3,533,933	-				-1.0
3,533,950	-				-2.2
3,534,010	-	ompR	b3405	0.17	-2.9
3,534,010	-	ompR	b3405	0.17	-2.1
3,534,057	-	ompR	b3405	0.24	-1.0
3,534,093	+	ompR	b3405	0.29	-3.9
3,534,097	+	ompR	b3405	0.29	-5.6
3,534,097	+	ompR	b3405	0.29	-1.4
3,534,097	+	ompR	b3405	0.29	-3.6
3,534,105	-	ompR	b3405	0.30	-3.6
3,534,105	-	ompR	b3405	0.30	-3.2
3,534,129	-	ompR	b3405	0.34	-3.6
3,534,168	-	ompR	b3405	0.39	-3.5
3,534,206	+	ompR	b3405	0.44	-3.1
3,534,228	-	ompR	b3405	0.47	-1.2
3,534,257	-	ompR	b3405	0.51	-3.5
3,534,260	-	ompR	b3405	0.52	-1.6
3,534,267	-	ompR	b3405	0.53	-2.2
3,534,267	-	ompR	b3405	0.53	-1.6
3,534,358	-	ompR	b3405	0.65	-3.6
3,534,436	+	ompR	b3405	0.76	-2.5
3,534,447	+	ompR	b3405	0.78	-1.8
3,534,456	-	ompR	b3405	0.79	-3.8
3,534,509	+	ompR	b3405	0.86	-3.8
3,534,514	+	ompR	b3405	0.87	-1.2
3,534,514	+	ompR	b3405	0.87	-1.7
3,534,522	-	ompR	b3405	0.88	-4.2
3,534,541	-				-1.2
3,534,541	-				-1.3
3,534,544	+				+1.0
3,534,606	-				-4.5
3,534,608	+				-4.1
3,534,608	+				-2.7
3,534,616	+				+0.9
3,534,625	-				-0.7
3,534,632	+				-3.3
3,534,684	-				-1.5
3,534,724	-				-3.4
3,534,783	-				+2.1
3,534,851	-				-1.4
3,534,851	-				+1.6
3,534,852	+				-3.3
3,534,861	-				-3.9
3,534,861	-				-1.5
3,534,889	+	greB	b3406	0.12	-2.7
3,534,889	+	greB	b3406	0.12	-2.0