Strain Fitness in Escherichia coli BW25113 around b3222

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,366,683	-	yhcG	b3220	0.74	-2.0
3,366,683	-	yhcG	b3220	0.74	-1.5
3,366,684	+	yhcG	b3220	0.74	-0.1
3,366,684	+	yhcG	b3220	0.74	+0.5
3,366,692	-	yhcG	b3220	0.75	+1.7
3,366,720	+	yhcG	b3220	0.77	-0.7
3,366,760	+	yhcG	b3220	0.81	+0.4
3,366,760	+	yhcG	b3220	0.81	+3.2
3,366,808	+	yhcG	b3220	0.85	-0.9
3,366,856	-	yhcG	b3220	0.89	+2.4
3,366,857	+	yhcG	b3220	0.89	-2.1
3,366,906	+				+0.4
3,366,924	-				-1.2
3,366,955	-				-2.5
3,366,960	+				-3.4
3,366,960	+				-2.1
3,366,960	+				+2.2
3,366,967	-				-0.5
3,366,968	-				-3.9
3,367,219	-	yhcH	b3221	0.39	+1.8
3,367,221	+	yhcH	b3221	0.40	+0.7
3,367,238	+	yhcH	b3221	0.43	+2.4
3,367,246	-	yhcH	b3221	0.45	-1.9
3,367,260	-	yhcH	b3221	0.48	+1.7
3,367,273	-	yhcH	b3221	0.51	-0.4
3,367,273	-	yhcH	b3221	0.51	+0.7
3,367,348	-	yhcH	b3221	0.67	-3.0
3,367,386	-	yhcH	b3221	0.75	-1.7
3,367,386	-	yhcH	b3221	0.75	-2.9
3,367,444	-	yhcH	b3221	0.88	+1.6
3,367,452	-	yhcH	b3221	0.89	-4.1
3,367,454	+				-4.0
3,367,480	-				-5.1
3,367,480	-				-0.5
3,367,489	+				+1.2
3,367,523	-				-3.5
3,367,600	+	yhcI	b3222	0.12	+1.1
3,367,600	+	yhcI	b3222	0.12	-3.3
3,367,666	-	yhcI	b3222	0.19	-0.2
3,367,678	+	yhcI	b3222	0.21	+2.4
3,367,678	+	yhcI	b3222	0.21	+3.1
3,367,691	+	yhcI	b3222	0.22	+1.8
3,367,691	+	yhcI	b3222	0.22	+3.6
3,367,725	+	yhcI	b3222	0.26	-2.8
3,367,728	+	yhcI	b3222	0.26	+0.8
3,367,768	-	yhcI	b3222	0.31	+2.2
3,367,855	-	yhcI	b3222	0.41	-1.4
3,367,855	-	yhcI	b3222	0.41	-0.5
3,367,901	+	yhcI	b3222	0.46	+0.1
3,368,002	+	yhcI	b3222	0.58	-1.8
3,368,179	-	yhcI	b3222	0.78	+1.8
3,368,179	-	yhcI	b3222	0.78	-3.8
3,368,184	-	yhcI	b3222	0.78	+1.7
3,368,285	+				-0.1
3,368,327	-				+0.3
3,368,368	+				-2.6
3,368,585	+	nanE	b3223	0.31	+0.7
3,368,593	-	nanE	b3223	0.32	-0.7
3,368,696	-	nanE	b3223	0.47	-0.2
3,368,699	+	nanE	b3223	0.48	+1.0
3,368,699	+	nanE	b3223	0.48	-0.6
3,368,703	+	nanE	b3223	0.48	+1.0
3,368,768	+	nanE	b3223	0.58	+0.2
3,368,780	+	nanE	b3223	0.60	+0.7
3,368,791	+	nanE	b3223	0.61	+0.4
3,368,791	+	nanE	b3223	0.61	+1.1
3,368,887	+	nanE	b3223	0.75	+1.1
3,368,989	-	nanE	b3223	0.90	+0.3
3,368,989	-	nanE	b3223	0.90	-2.4
3,369,084	+				+4.0
3,369,297	+	nanT	b3224	0.13	+2.0