Strain Fitness in Escherichia coli BW25113 around b2953

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
3,093,416	+	yggS	b2951	0.42	-1.7
3,093,416	+	yggS	b2951	0.42	+2.3
3,093,416	+	yggS	b2951	0.42	-1.6
3,093,604	+	yggS	b2951	0.69	-0.2
3,093,604	+	yggS	b2951	0.69	-2.5
3,093,675	+	yggS	b2951	0.79	+1.2
3,093,729	-	yggS	b2951	0.86	+1.1
3,093,855	-				-0.5
3,093,855	-				+0.0
3,093,883	+				+0.9
3,093,891	-				-3.6
3,093,930	-	yggT	b2952	0.16	-2.9
3,093,930	-	yggT	b2952	0.16	+1.6
3,093,940	-	yggT	b2952	0.17	+2.0
3,094,022	+	yggT	b2952	0.32	-0.5
3,094,067	-	yggT	b2952	0.40	+1.6
3,094,089	-	yggT	b2952	0.44	-3.5
3,094,089	-	yggT	b2952	0.44	-1.3
3,094,290	+	yggT	b2952	0.79	+2.5
3,094,319	+	yggT	b2952	0.84	-0.4
3,094,324	+	yggT	b2952	0.85	+2.2
3,094,333	+	yggT	b2952	0.87	+0.7
3,094,333	+	yggT	b2952	0.87	-0.4
3,094,391	-				-1.4
3,094,400	+				+1.0
3,094,400	+				-4.2
3,094,451	+	yggU	b2953	0.16	+0.6
3,094,451	+	yggU	b2953	0.16	-3.5
3,094,542	+	yggU	b2953	0.47	-3.3
3,094,775	+	yggV	b2954	0.12	+1.4
3,094,879	+	yggV	b2954	0.30	-0.6
3,094,920	-	yggV	b2954	0.37	+0.3
3,094,948	+	yggV	b2954	0.41	-4.3
3,095,006	+	yggV	b2954	0.51	-2.4
3,095,095	-	yggV	b2954	0.66	+0.1
3,095,115	+	yggV	b2954	0.69	+0.3
3,095,136	+	yggV	b2954	0.73	+0.7
3,095,299	-				+0.5
3,095,380	+				+0.6
3,095,409	-	yggW	b2955	0.11	-0.2
3,095,442	-	yggW	b2955	0.13	-2.1
3,095,448	+	yggW	b2955	0.14	-3.8
3,095,456	-	yggW	b2955	0.15	-0.5
3,095,485	+	yggW	b2955	0.17	+2.2
3,095,609	-	yggW	b2955	0.28	+1.9
3,095,661	-	yggW	b2955	0.33	+0.2