Strain Fitness in Escherichia coli BW25113 around b2830

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
2,965,575	-	ptsP	b2829	0.61	+0.9
2,965,575	-	ptsP	b2829	0.61	+1.9
2,965,860	+	ptsP	b2829	0.73	-5.4
2,965,876	+	ptsP	b2829	0.74	+1.5
2,965,910	-	ptsP	b2829	0.76	+0.8
2,965,937	-	ptsP	b2829	0.77	-4.9
2,965,937	-	ptsP	b2829	0.77	-1.7
2,965,968	+	ptsP	b2829	0.78	+0.1
2,965,971	+	ptsP	b2829	0.78	+1.6
2,966,002	+	ptsP	b2829	0.80	+0.1
2,966,055	-	ptsP	b2829	0.82	+1.8
2,966,063	+				+3.2
2,966,063	+	ptsP	b2829	0.82	+0.7
2,966,064	+	ptsP	b2829	0.83	+0.8
2,966,089	-	ptsP	b2829	0.84	-0.6
2,966,089	-	ptsP	b2829	0.84	-0.1
2,966,167	-	ptsP	b2829	0.87	-4.9
2,966,258	+				+1.7
2,966,346	+				+1.3
2,966,346	+				+2.1
2,966,346	-				+0.2
2,966,400	+				+0.1
2,966,459	-				+0.5
2,966,459	-				+2.6
2,966,465	+				+0.9
2,966,467	+				+0.4
2,966,467	+				+0.4
2,966,474	-				-2.5
2,966,484	-				+1.1
2,966,484	-				-4.6
2,966,532	+	nudH	b2830	0.12	-1.2
2,966,565	+	nudH	b2830	0.18	-2.3
2,966,645	+	nudH	b2830	0.33	-3.4
2,966,645	+	nudH	b2830	0.33	-2.7
2,966,722	+	nudH	b2830	0.48	-2.4
2,967,071	+				+0.5
2,967,078	+				+3.6
2,967,078	+				-3.8
2,967,640	-				+0.8
2,967,694	-				+2.1
2,967,728	+				-0.6
2,967,768	-	mutH	b2831	0.12	-1.9
2,967,768	-	mutH	b2831	0.12	-1.1
2,967,994	-	mutH	b2831	0.45	+0.3