Strain Fitness in Escherichia coli BW25113 around b2810

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
2,940,399	-	gcvA	b2808	0.79	-2.6
2,940,417	-	gcvA	b2808	0.81	+1.5
2,940,477	-	gcvA	b2808	0.88	-2.4
2,940,522	+				-2.5
2,940,587	-				+0.8
2,940,719	+				-4.1
2,940,838	-	gcvB	b4443	0.58	+2.1
2,940,909	-				+1.1
2,941,082	-	b2809	b2809	0.62	-0.8
2,941,082	-	b2809	b2809	0.62	+1.2
2,941,096	-	b2809	b2809	0.68	-2.3
2,941,096	-	b2809	b2809	0.68	+1.9
2,941,157	+				-3.5
2,941,157	+				-1.4
2,941,203	+				+2.6
2,941,203	+				-1.6
2,941,239	+				-0.5
2,941,254	-				+2.2
2,941,254	-				+2.8
2,941,422	+				+1.5
2,941,422	+				+0.8
2,941,425	+				+1.1
2,941,430	-				-4.1
2,941,430	-				+1.0
2,941,619	-	csdA	b2810	0.22	-2.4
2,941,619	-	csdA	b2810	0.22	-1.5
2,941,657	+	csdA	b2810	0.25	-2.0
2,941,663	-	csdA	b2810	0.25	-2.2
2,941,736	+	csdA	b2810	0.31	-3.3
2,941,743	-	csdA	b2810	0.32	-0.9
2,941,790	-	csdA	b2810	0.36	+1.4
2,941,790	-	csdA	b2810	0.36	-4.3
2,941,898	-	csdA	b2810	0.45	+0.4
2,941,934	+	csdA	b2810	0.48	+0.8
2,941,940	+	csdA	b2810	0.48	+0.2
2,942,060	-	csdA	b2810	0.58	-3.5
2,942,082	+	csdA	b2810	0.60	-2.2
2,942,082	+	csdA	b2810	0.60	-3.7
2,942,244	-	csdA	b2810	0.73	-1.4
2,942,244	-	csdA	b2810	0.73	-3.1
2,942,291	-	csdA	b2810	0.77	-2.7
2,942,404	+	csdA	b2810	0.87	-4.0
2,942,492	+				-0.2
2,942,500	-				+2.0
2,942,500	-				+2.0
2,942,522	+				-4.1
2,942,588	+				+1.7
2,942,603	+				-0.7
2,942,639	-	ygdK	b2811	0.17	-1.5
2,942,639	-	ygdK	b2811	0.17	-4.6
2,942,733	-	ygdK	b2811	0.38	-0.4
2,942,908	+	ygdK	b2811	0.77	+2.1
2,942,935	+	ygdK	b2811	0.84	-1.4
2,942,935	+	ygdK	b2811	0.84	+0.7
2,942,935	+	ygdK	b2811	0.84	+0.1
2,942,943	-	ygdK	b2811	0.85	-3.0
2,942,996	+				-0.5
2,943,138	-				-2.8
2,943,208	+	ygdL	b2812	0.19	+0.9
2,943,208	+	ygdL	b2812	0.19	-2.8
2,943,240	-	ygdL	b2812	0.23	-4.2
2,943,453	+	ygdL	b2812	0.49	+1.7
2,943,473	-	ygdL	b2812	0.51	+0.1
2,943,478	-	ygdL	b2812	0.52	-1.5
2,943,509	+	ygdL	b2812	0.56	-2.0
2,943,509	+	ygdL	b2812	0.56	+0.0
2,943,517	-	ygdL	b2812	0.57	+0.8
2,943,517	-	ygdL	b2812	0.57	+0.7
2,943,517	-	ygdL	b2812	0.57	-4.1
2,943,532	-	ygdL	b2812	0.59	-1.1
2,943,563	-	ygdL	b2812	0.63	-4.6