Strain Fitness in Escherichia coli BW25113 around b2197

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
2,291,969	+	ccmF	b2196	0.51	+1.7
2,291,990	-	ccmF	b2196	0.52	+0.9
2,292,155	-	ccmF	b2196	0.60	-3.6
2,292,347	-	ccmF	b2196	0.70	+3.9
2,292,347	-	ccmF	b2196	0.70	+0.8
2,292,376	-	ccmF	b2196	0.72	-3.6
2,292,376	-	ccmF	b2196	0.72	+1.7
2,292,391	+	ccmF	b2196	0.72	+2.6
2,292,401	-	ccmF	b2196	0.73	+2.7
2,292,500	-	ccmF	b2196	0.78	-2.6
2,292,635	+	ccmF	b2196	0.85	-2.0
2,292,635	+	ccmF	b2196	0.85	-2.8
2,292,636	-	ccmF	b2196	0.85	-0.1
2,292,645	+	ccmF	b2196	0.85	+1.1
2,292,673	+	ccmF	b2196	0.87	+1.8
2,292,724	-	ccmF	b2196	0.90	+0.6
2,292,725	+	ccmF	b2196	0.90	-0.6
2,292,729	+	ccmF	b2196	0.90	-2.7
2,292,758	+				-0.6
2,292,758	+				+0.2
2,292,833	-				-0.9
2,292,847	+				-2.5
2,292,940	+				-0.4
2,292,946	-				-1.0
2,293,079	+	ccmE	b2197	0.33	-1.9
2,293,079	+	ccmE	b2197	0.33	-0.4
2,293,124	+	ccmE	b2197	0.42	-3.4
2,293,194	+	ccmE	b2197	0.56	-2.9
2,293,323	-	ccmE	b2197	0.83	+1.0
2,293,323	-	ccmE	b2197	0.83	-4.3
2,293,332	-	ccmE	b2197	0.85	+0.8
2,293,332	-	ccmE	b2197	0.85	+0.6
2,293,365	-				+2.7
2,293,450	+	ccmD	b2198	0.24	-0.2
2,293,526	-	ccmD	b2198	0.60	+0.9
2,293,757	-	ccmC	b2199	0.21	-2.9
2,293,866	-	ccmC	b2199	0.35	-0.0
2,293,966	+	ccmC	b2199	0.49	+2.6
2,293,966	+	ccmC	b2199	0.49	-0.1
2,293,966	+	ccmC	b2199	0.49	-3.3
2,293,966	+	ccmC	b2199	0.49	-3.8
2,293,966	+	ccmC	b2199	0.49	+0.7
2,294,113	+	ccmC	b2199	0.69	-1.8
2,294,244	+	ccmC	b2199	0.87	-4.0
2,294,244	+	ccmC	b2199	0.87	+0.1
2,294,249	+	ccmC	b2199	0.87	-1.3
2,294,284	-				-3.9
2,294,342	-				+0.3