Strain Fitness in Escherichia coli BW25113 around b2009

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
2,077,858	-	yeeA	b2008	0.28	-0.2
2,077,895	+	yeeA	b2008	0.32	-3.3
2,077,895	+	yeeA	b2008	0.32	-2.7
2,078,047	-	yeeA	b2008	0.46	-0.3
2,078,068	+	yeeA	b2008	0.48	-3.7
2,078,115	-	yeeA	b2008	0.53	+0.1
2,078,611	-				+1.1
2,078,684	-				+0.6
2,078,689	-				+2.6
2,078,853	+				+0.4
2,078,861	-	sbmC	b2009	0.10	+0.8
2,078,864	+	sbmC	b2009	0.11	+1.7
2,079,000	+	sbmC	b2009	0.39	+1.2
2,079,077	+	sbmC	b2009	0.56	-2.9
2,079,281	+				-0.7
2,079,472	-				-1.9
2,079,472	-				-3.3
2,079,505	-				-3.9
2,079,568	-	dacD	b2010	0.14	+1.0
2,079,612	+	dacD	b2010	0.18	-4.1
2,079,630	+	dacD	b2010	0.19	+0.8
2,079,784	+	dacD	b2010	0.32	-3.6
2,079,833	-	dacD	b2010	0.37	-0.1
2,079,833	-	dacD	b2010	0.37	+0.2
2,079,857	+	dacD	b2010	0.39	-2.6
2,079,857	+	dacD	b2010	0.39	+0.5
2,079,966	+	dacD	b2010	0.48	-3.0
2,080,001	+	dacD	b2010	0.51	-3.5
2,080,041	+	dacD	b2010	0.54	-2.6