Strain Fitness in Escherichia coli BW25113 around b1962

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
2,030,164	+	dcm	b1961	0.87	-4.2
2,030,226	+				-3.8
2,030,226	+				+1.3
2,030,231	+				+0.9
2,030,451	+				-3.3
2,030,564	+	yedJ	b1962	0.22	+2.6
2,030,595	+	yedJ	b1962	0.27	+0.6
2,030,690	+	yedJ	b1962	0.41	+1.5
2,030,849	+	yedJ	b1962	0.63	-0.0
2,031,000	+	yedJ	b1962	0.85	+1.4
2,031,033	-	yedJ	b1962	0.90	+1.0
2,031,117	+				-3.8
2,031,157	+				+0.8
2,031,157	+				-3.5
2,031,174	+				+1.6
2,031,179	+				-0.5
2,031,179	+				-1.8
2,031,181	-	b1963	b1963	0.10	-0.8
2,031,181	-	b1963	b1963	0.10	-3.6
2,031,226	+	b1963	b1963	0.23	+0.4
2,031,226	+	b1963	b1963	0.23	-0.7
2,031,244	+	b1963	b1963	0.28	+0.5
2,031,369	-	b1963	b1963	0.62	-1.0
2,031,378	+	b1963	b1963	0.64	-0.8
2,031,473	+				-0.1
2,031,507	+				-3.7
2,031,521	+				+2.1
2,031,522	+				+2.9
2,031,527	-				-1.6
2,031,527	-				+3.5
2,031,529	-				-2.7
2,031,697	+	rseX	b4603	0.26	-3.0
2,031,776	-				-2.6
2,031,995	-				+3.1
2,031,995	-				-0.2
2,032,073	-				+0.4