Strain Fitness in Escherichia coli BW25113 around b1440

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
1,508,820	+	ydcR	b1439	0.56	-4.1
1,508,820	+	ydcR	b1439	0.56	-0.8
1,508,990	-	ydcR	b1439	0.68	-0.5
1,509,170	-	ydcR	b1439	0.81	+0.9
1,509,170	-	ydcR	b1439	0.81	-1.6
1,509,236	+	ydcR	b1439	0.86	-2.4
1,509,369	+				-0.7
1,509,375	-				-3.5
1,509,377	-				-2.8
1,509,377	-				-1.7
1,509,674	-				-0.4
1,509,693	+				-1.0
1,509,707	+				-0.0
1,509,718	+				-3.1
1,509,718	+				-0.2
1,509,733	-				-1.9
1,509,809	+	ydcS	b1440	0.11	+0.7
1,509,834	+	ydcS	b1440	0.14	+0.2
1,509,884	+	ydcS	b1440	0.18	-0.7
1,510,004	+	ydcS	b1440	0.28	+0.5
1,510,220	+	ydcS	b1440	0.47	-0.6
1,510,227	+	ydcS	b1440	0.48	-0.2
1,510,336	-	ydcS	b1440	0.57	-1.7
1,510,336	-	ydcS	b1440	0.57	-3.3
1,510,361	+	ydcS	b1440	0.60	+0.8
1,510,390	+	ydcS	b1440	0.62	-0.9
1,510,390	+	ydcS	b1440	0.62	+0.6
1,510,392	-	ydcS	b1440	0.62	-0.3
1,510,439	-	ydcS	b1440	0.66	-1.0
1,510,661	+	ydcS	b1440	0.86	+0.4
1,510,661	+	ydcS	b1440	0.86	-0.5
1,510,763	-				-2.4
1,510,962	-	ydcT	b1441	0.12	-1.4
1,511,021	+	ydcT	b1441	0.18	+0.5
1,511,073	+	ydcT	b1441	0.23	+0.8
1,511,302	+	ydcT	b1441	0.45	+0.6
1,511,365	-	ydcT	b1441	0.52	+2.0
1,511,428	-	ydcT	b1441	0.58	+3.0
1,511,757	-				+1.3
1,511,782	+				-4.4