Strain Fitness in Escherichia coli BW25113 around b1408

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
1,474,854	+	ydbD	b1407	0.73	+2.4
1,474,887	-	ydbD	b1407	0.75	+0.4
1,474,889	+	ydbD	b1407	0.75	+1.4
1,474,897	-	ydbD	b1407	0.75	+2.4
1,474,943	-	ydbD	b1407	0.77	+2.4
1,475,091	-	ydbD	b1407	0.83	-0.2
1,475,101	+	ydbD	b1407	0.84	+1.4
1,475,101	-	ydbD	b1407	0.84	-0.2
1,475,134	-	ydbD	b1407	0.85	+0.7
1,475,145	+	ydbD	b1407	0.86	+2.4
1,475,145	+	ydbD	b1407	0.86	+0.8
1,475,145	-	ydbD	b1407	0.86	-2.0
1,475,145	-	ydbD	b1407	0.86	+1.1
1,475,155	-	ydbD	b1407	0.86	-2.4
1,475,183	+	ydbD	b1407	0.87	+2.4
1,475,232	+	ydbD	b1407	0.89	+0.4
1,475,242	+	ydbD	b1407	0.90	-1.0
1,475,254	+				-3.0
1,475,348	+				+2.4
1,475,383	-				-3.4
1,475,610	-				-2.8
1,475,691	-				+0.4
1,475,719	+	b1408	b1408	0.12	+2.4
1,475,771	+	b1408	b1408	0.21	+0.7
1,475,771	+	b1408	b1408	0.21	+3.7
1,475,790	+	b1408	b1408	0.24	+0.7
1,475,838	+	b1408	b1408	0.32	+0.9
1,475,838	+	b1408	b1408	0.32	-1.4
1,475,850	+	b1408	b1408	0.34	-0.4
1,475,850	+	b1408	b1408	0.34	-3.5
1,475,862	+	b1408	b1408	0.36	-2.8
1,475,862	+	b1408	b1408	0.36	-3.5
1,475,866	+	b1408	b1408	0.36	+3.0
1,475,866	+	b1408	b1408	0.36	-2.1
1,475,866	-	b1408	b1408	0.36	+2.4
1,475,903	+	b1408	b1408	0.43	-1.0
1,476,147	+	b1408	b1408	0.83	+0.4
1,476,147	+	b1408	b1408	0.83	-0.2
1,476,882	-	ynbB	b1409	0.70	+2.4
1,476,882	-	ynbB	b1409	0.70	+2.4
1,476,894	-	ynbB	b1409	0.72	+2.4
1,476,894	-	ynbB	b1409	0.72	+2.4
1,476,902	+	ynbB	b1409	0.73	+1.4
1,476,924	+	ynbB	b1409	0.75	-1.2
1,476,934	+	ynbB	b1409	0.76	+0.4
1,476,934	+	ynbB	b1409	0.76	+2.4
1,477,000	+	ynbB	b1409	0.84	+2.4
1,477,008	+	ynbB	b1409	0.85	-0.8
1,477,055	+	ynbB	b1409	0.90	+2.4
1,477,064	-				+2.4
1,477,066	+				+2.4
1,477,074	+				+2.2
1,477,088	+				+0.4
1,477,214	-				-3.4