Strain Fitness in Escherichia coli BW25113 around b1197

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
1,243,904	+				+0.1
1,244,024	-	ymgE	b1195	0.29	-0.9
1,244,060	-	ymgE	b1195	0.43	+0.1
1,244,118	+	ymgE	b1195	0.65	+1.4
1,244,160	+	ymgE	b1195	0.82	-4.1
1,244,160	+	ymgE	b1195	0.82	+2.4
1,244,164	+	ymgE	b1195	0.84	-4.1
1,244,225	+				+0.2
1,244,225	+				-3.0
1,244,225	+				-2.9
1,244,238	+				+0.6
1,244,262	+				+0.3
1,244,267	+				+2.0
1,244,328	+				+3.1
1,244,328	+				+0.3
1,244,328	+				-0.5
1,244,336	-				+1.4
1,244,336	-				-0.2
1,244,417	+				+0.8
1,244,430	-	ycgY	b1196	0.11	+2.9
1,244,451	+	ycgY	b1196	0.15	+1.7
1,244,603	-	ycgY	b1196	0.50	+2.4
1,244,645	+	ycgY	b1196	0.59	+1.4
1,244,677	-	ycgY	b1196	0.67	+5.1
1,244,681	-	ycgY	b1196	0.68	+2.4
1,244,685	+	ycgY	b1196	0.68	+1.6
1,244,685	+	ycgY	b1196	0.68	-1.8
1,244,756	+	ycgY	b1196	0.85	+2.8
1,244,760	-	ycgY	b1196	0.85	-1.3
1,244,777	+	ycgY	b1196	0.89	+0.5
1,244,911	+				-2.5
1,244,940	-				+0.7
1,245,040	-				-2.3
1,245,055	+				+2.4
1,245,144	+	treA	b1197	0.14	-1.8
1,245,144	+	treA	b1197	0.14	-0.9
1,245,150	-	treA	b1197	0.15	-1.9
1,245,170	+	treA	b1197	0.16	-2.5
1,245,237	-	treA	b1197	0.20	-0.1
1,245,247	-	treA	b1197	0.20	+1.3
1,245,292	-	treA	b1197	0.23	+1.9
1,245,292	-	treA	b1197	0.23	+0.7
1,245,297	-	treA	b1197	0.23	-3.0
1,245,297	-	treA	b1197	0.23	-0.0
1,245,375	-	treA	b1197	0.28	+0.4
1,245,458	+	treA	b1197	0.33	-2.5
1,245,458	+	treA	b1197	0.33	-1.9
1,245,548	+	treA	b1197	0.38	-2.3
1,245,877	+	treA	b1197	0.57	-0.9
1,245,952	+	treA	b1197	0.62	+0.9
1,245,952	+	treA	b1197	0.62	+1.8
1,246,107	-	treA	b1197	0.71	-2.8
1,246,158	+	treA	b1197	0.74	-1.8
1,246,160	+	treA	b1197	0.74	-0.6
1,246,160	+	treA	b1197	0.74	-3.6
1,246,168	-	treA	b1197	0.75	+1.2
1,246,185	-	treA	b1197	0.76	-2.3
1,246,410	-	treA	b1197	0.89	+0.4
1,246,505	-				+2.2
1,246,513	-				-0.4
1,246,666	-				+0.5
1,246,696	-				-0.8
1,246,799	-				-0.9
1,246,799	-				+0.7
1,246,898	-				+2.0
1,246,904	+				-1.4
1,246,924	+				+0.4
1,246,925	-				-0.1
1,246,944	+				+2.3
1,246,944	+				-0.8
1,247,303	+	dhaM	b1198	0.27	-1.4
1,247,303	+	dhaM	b1198	0.27	-0.8
1,247,349	+	dhaM	b1198	0.30	-2.5
1,247,376	+	dhaM	b1198	0.32	+2.7
1,247,377	+	dhaM	b1198	0.32	+2.5
1,247,377	-	dhaM	b1198	0.32	-1.4
1,247,497	-	dhaM	b1198	0.41	-3.3
1,247,566	-	dhaM	b1198	0.46	+2.3