Strain Fitness in Escherichia coli BW25113 around b0980

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
1,039,201	+	appB	b0979	0.60	-0.2
1,039,201	+	appB	b0979	0.60	+0.3
1,039,201	+	appB	b0979	0.60	+0.5
1,039,209	-	appB	b0979	0.61	+0.0
1,039,209	-	appB	b0979	0.61	-1.5
1,039,263	+	appB	b0979	0.65	-1.2
1,039,453	-	appB	b0979	0.82	+1.5
1,039,453	-	appB	b0979	0.82	-1.5
1,039,528	+	appB	b0979	0.89	-2.6
1,039,566	+				+1.7
1,039,581	+				+0.7
1,039,617	+				-3.1
1,039,728	-	yccB	b4592	0.65	+3.3
1,039,730	+	yccB	b4592	0.67	-1.7
1,039,730	+	yccB	b4592	0.67	+1.8
1,039,764	+				+1.7
1,039,829	+				+1.5
1,039,878	-				-0.8
1,039,903	+				-4.1
1,039,903	+				-2.3
1,039,916	-				+0.9
1,039,950	+				+0.9
1,039,950	+				-1.1
1,039,950	+				+1.7
1,039,960	-				+0.9
1,040,065	-	appA	b0980	0.17	-0.2
1,040,184	-	appA	b0980	0.26	+2.8
1,040,226	-	appA	b0980	0.30	+0.1
1,040,254	+	appA	b0980	0.32	-0.5
1,040,348	-	appA	b0980	0.39	+0.1
1,040,782	-	appA	b0980	0.73	+1.9
1,040,797	-	appA	b0980	0.74	-1.0
1,040,816	+	appA	b0980	0.75	+1.5
1,040,816	+	appA	b0980	0.75	+2.6
1,040,822	-	appA	b0980	0.76	-2.9
1,040,822	-	appA	b0980	0.76	+2.2
1,040,874	+	appA	b0980	0.80	+0.4
1,040,894	+	appA	b0980	0.81	-2.2
1,040,894	+	appA	b0980	0.81	+2.4
1,041,148	-				+1.9
1,041,148	-				-2.8
1,041,171	+				-3.5
1,041,197	-				-0.7
1,041,197	-				-1.4
1,041,272	+				-4.7
1,041,286	-				-2.3
1,041,331	+				+0.5
1,041,331	+				+0.8
1,041,339	-				+1.3
1,041,360	-				+1.1
1,041,366	+				-2.4
1,041,419	-				+0.9
1,041,554	+	yccC	b0981	0.14	+3.0
1,041,554	+	yccC	b0981	0.14	+1.7
1,041,573	+	yccC	b0981	0.15	+1.5
1,041,573	+	yccC	b0981	0.15	-2.7
1,041,695	+	yccC	b0981	0.20	-3.8
1,042,035	-	yccC	b0981	0.36	+2.1
1,042,035	-	yccC	b0981	0.36	+0.1
1,042,053	+	yccC	b0981	0.37	-2.1