Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybgO and ybgP overlap by 4 nucleotides ybgP and ybgQ are separated by 14 nucleotides
b0716: ybgO - orf, hypothetical protein (VIMSS), at 747,144 to 748,205
ybgO
b0717: ybgP - predicted assembly protein (NCBI), at 748,202 to 748,930
ybgP
b0718: ybgQ - putative outer membrane protein (VIMSS), at 748,945 to 751,392
ybgQ
Position (kb) 748
749 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 747.251 kb on + strand, within ybgO at 747.251 kb on + strand, within ybgO at 747.255 kb on - strand, within ybgO at 747.255 kb on - strand, within ybgO at 747.303 kb on - strand, within ybgO at 747.329 kb on + strand, within ybgO at 747.346 kb on + strand, within ybgO at 747.363 kb on - strand, within ybgO at 747.363 kb on - strand, within ybgO at 747.372 kb on - strand, within ybgO at 747.372 kb on - strand, within ybgO at 747.382 kb on - strand, within ybgO at 747.382 kb on - strand, within ybgO at 747.393 kb on + strand, within ybgO at 747.393 kb on - strand, within ybgO at 747.393 kb on - strand, within ybgO at 747.393 kb on - strand, within ybgO at 747.435 kb on + strand, within ybgO at 747.438 kb on - strand, within ybgO at 747.438 kb on - strand, within ybgO at 747.446 kb on + strand, within ybgO at 747.446 kb on + strand, within ybgO at 747.470 kb on - strand, within ybgO at 747.470 kb on - strand, within ybgO at 747.554 kb on + strand, within ybgO at 747.583 kb on + strand, within ybgO at 747.583 kb on + strand, within ybgO at 747.618 kb on - strand, within ybgO at 747.618 kb on - strand, within ybgO at 747.619 kb on + strand, within ybgO at 747.716 kb on + strand, within ybgO at 747.724 kb on - strand, within ybgO at 747.724 kb on - strand, within ybgO at 747.760 kb on + strand, within ybgO at 747.760 kb on + strand, within ybgO at 747.804 kb on - strand, within ybgO at 747.806 kb on + strand, within ybgO at 747.814 kb on - strand, within ybgO at 747.819 kb on - strand, within ybgO at 747.819 kb on - strand, within ybgO at 747.824 kb on - strand, within ybgO at 747.837 kb on + strand, within ybgO at 747.838 kb on + strand, within ybgO at 747.838 kb on + strand, within ybgO at 747.841 kb on + strand, within ybgO at 747.846 kb on - strand, within ybgO at 747.897 kb on + strand, within ybgO at 747.897 kb on + strand at 747.957 kb on + strand, within ybgO at 747.957 kb on + strand, within ybgO at 747.957 kb on + strand, within ybgO at 747.958 kb on + strand, within ybgO at 747.960 kb on - strand, within ybgO at 748.262 kb on - strand at 748.367 kb on - strand, within ybgP at 748.367 kb on - strand, within ybgP at 748.471 kb on + strand, within ybgP at 748.526 kb on - strand, within ybgP at 748.550 kb on + strand, within ybgP at 748.550 kb on + strand, within ybgP at 748.569 kb on - strand, within ybgP at 748.606 kb on + strand, within ybgP at 748.606 kb on + strand, within ybgP at 748.651 kb on - strand, within ybgP at 748.668 kb on + strand, within ybgP at 748.792 kb on - strand, within ybgP at 748.954 kb on + strand at 748.954 kb on + strand at 749.016 kb on + strand at 749.016 kb on + strand at 749.021 kb on + strand at 749.029 kb on - strand at 749.097 kb on + strand at 749.143 kb on + strand at 749.143 kb on + strand at 749.259 kb on + strand, within ybgQ at 749.278 kb on - strand, within ybgQ at 749.278 kb on - strand, within ybgQ at 749.300 kb on + strand, within ybgQ at 749.307 kb on + strand, within ybgQ at 749.307 kb on + strand, within ybgQ at 749.308 kb on - strand, within ybgQ at 749.308 kb on - strand, within ybgQ at 749.363 kb on + strand, within ybgQ at 749.511 kb on - strand, within ybgQ at 749.511 kb on - strand, within ybgQ at 749.562 kb on + strand, within ybgQ at 749.593 kb on - strand, within ybgQ at 749.680 kb on - strand, within ybgQ at 749.695 kb on - strand, within ybgQ at 749.706 kb on - strand, within ybgQ at 749.764 kb on + strand, within ybgQ at 749.764 kb on + strand, within ybgQ at 749.805 kb on - strand, within ybgQ at 749.861 kb on + strand, within ybgQ at 749.861 kb on + strand, within ybgQ at 749.912 kb on + strand, within ybgQ at 749.929 kb on + strand, within ybgQ at 749.929 kb on + strand, within ybgQ
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 747,251 + ybgO b0716 0.10 +3.1 747,251 + ybgO b0716 0.10 -2.6 747,255 - ybgO b0716 0.10 -3.3 747,255 - ybgO b0716 0.10 -4.1 747,303 - ybgO b0716 0.15 -4.2 747,329 + ybgO b0716 0.17 -1.9 747,346 + ybgO b0716 0.19 -0.9 747,363 - ybgO b0716 0.21 -2.2 747,363 - ybgO b0716 0.21 +1.2 747,372 - ybgO b0716 0.21 +1.2 747,372 - ybgO b0716 0.21 +3.1 747,382 - ybgO b0716 0.22 +0.8 747,382 - ybgO b0716 0.22 -1.4 747,393 + ybgO b0716 0.23 -1.5 747,393 - ybgO b0716 0.23 -0.8 747,393 - ybgO b0716 0.23 -1.2 747,393 - ybgO b0716 0.23 +0.7 747,435 + ybgO b0716 0.27 -0.8 747,438 - ybgO b0716 0.28 +2.4 747,438 - ybgO b0716 0.28 +1.9 747,446 + ybgO b0716 0.28 +1.4 747,446 + ybgO b0716 0.28 -0.1 747,470 - ybgO b0716 0.31 -0.9 747,470 - ybgO b0716 0.31 -1.2 747,554 + ybgO b0716 0.39 +0.1 747,583 + ybgO b0716 0.41 -1.8 747,583 + ybgO b0716 0.41 +1.2 747,618 - ybgO b0716 0.45 -3.4 747,618 - ybgO b0716 0.45 +1.3 747,619 + ybgO b0716 0.45 +1.1 747,716 + ybgO b0716 0.54 +1.1 747,724 - ybgO b0716 0.55 +3.1 747,724 - ybgO b0716 0.55 +2.1 747,760 + ybgO b0716 0.58 +2.9 747,760 + ybgO b0716 0.58 +1.3 747,804 - ybgO b0716 0.62 -0.6 747,806 + ybgO b0716 0.62 -0.4 747,814 - ybgO b0716 0.63 -3.3 747,819 - ybgO b0716 0.64 +2.0 747,819 - ybgO b0716 0.64 +1.7 747,824 - ybgO b0716 0.64 +1.9 747,837 + ybgO b0716 0.65 +0.4 747,838 + ybgO b0716 0.65 +3.6 747,838 + ybgO b0716 0.65 -2.1 747,841 + ybgO b0716 0.66 -1.2 747,846 - ybgO b0716 0.66 +0.8 747,897 + ybgO b0716 0.71 -3.4 747,897 + +1.7 747,957 + ybgO b0716 0.77 +1.5 747,957 + ybgO b0716 0.77 +1.1 747,957 + ybgO b0716 0.77 -0.8 747,958 + ybgO b0716 0.77 -2.1 747,960 - ybgO b0716 0.77 +4.0 748,262 - -4.2 748,367 - ybgP b0717 0.23 -2.4 748,367 - ybgP b0717 0.23 -0.2 748,471 + ybgP b0717 0.37 -1.8 748,526 - ybgP b0717 0.44 +0.1 748,550 + ybgP b0717 0.48 -3.1 748,550 + ybgP b0717 0.48 +0.5 748,569 - ybgP b0717 0.50 +1.0 748,606 + ybgP b0717 0.55 +4.1 748,606 + ybgP b0717 0.55 -2.8 748,651 - ybgP b0717 0.62 -0.2 748,668 + ybgP b0717 0.64 +0.0 748,792 - ybgP b0717 0.81 +2.0 748,954 + +0.3 748,954 + -2.5 749,016 + -3.6 749,016 + -4.3 749,021 + -1.3 749,029 - -4.1 749,097 + +1.2 749,143 + -2.5 749,143 + +1.5 749,259 + ybgQ b0718 0.13 +1.2 749,278 - ybgQ b0718 0.14 +0.8 749,278 - ybgQ b0718 0.14 -1.7 749,300 + ybgQ b0718 0.15 +0.9 749,307 + ybgQ b0718 0.15 -0.8 749,307 + ybgQ b0718 0.15 -3.0 749,308 - ybgQ b0718 0.15 -3.0 749,308 - ybgQ b0718 0.15 -2.9 749,363 + ybgQ b0718 0.17 +1.0 749,511 - ybgQ b0718 0.23 +2.0 749,511 - ybgQ b0718 0.23 -1.3 749,562 + ybgQ b0718 0.25 +0.1 749,593 - ybgQ b0718 0.26 -2.1 749,680 - ybgQ b0718 0.30 +1.4 749,695 - ybgQ b0718 0.31 -0.1 749,706 - ybgQ b0718 0.31 -0.2 749,764 + ybgQ b0718 0.33 +2.4 749,764 + ybgQ b0718 0.33 +1.4 749,805 - ybgQ b0718 0.35 +0.9 749,861 + ybgQ b0718 0.37 +1.3 749,861 + ybgQ b0718 0.37 +2.2 749,912 + ybgQ b0718 0.40 +2.3 749,929 + ybgQ b0718 0.40 -4.8 749,929 + ybgQ b0718 0.40 +1.9
Or see this region's nucleotide sequence