Strain Fitness in Escherichia coli BW25113 around b0051

Experiment: Tetrahymena sp., Mixed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetrahymena sp., Mixed culture-1
50,717	-	apaH	b0049	0.40	-1.9
50,785	-	apaH	b0049	0.48	-2.1
50,791	+	apaH	b0049	0.49	-0.7
50,802	+	apaH	b0049	0.50	-1.7
50,829	-	apaH	b0049	0.53	+1.1
50,859	-	apaH	b0049	0.57	-1.4
50,877	+	apaH	b0049	0.59	+0.1
51,025	+	apaH	b0049	0.77	-1.7
51,109	-	apaH	b0049	0.86	-2.8
51,177	+				-0.7
51,177	+				-1.2
51,185	-				-2.0
51,190	+				-2.5
51,190	+				+0.9
51,240	+				-0.3
51,240	+				+0.1
51,311	+	apaG	b0050	0.22	-2.9
51,311	+	apaG	b0050	0.22	-2.8
51,322	-	apaG	b0050	0.25	-1.6
51,326	-	apaG	b0050	0.26	-2.4
51,334	-	apaG	b0050	0.28	+0.1
51,336	-	apaG	b0050	0.28	-0.4
51,353	+	apaG	b0050	0.33	-0.0
51,353	+	apaG	b0050	0.33	+1.2
51,353	-	apaG	b0050	0.33	+0.1
51,364	-	apaG	b0050	0.36	-0.3
51,372	-	apaG	b0050	0.38	-0.1
51,415	+	apaG	b0050	0.49	+1.8
51,423	-	apaG	b0050	0.51	-0.1
51,466	+	apaG	b0050	0.63	+3.0
51,472	+	apaG	b0050	0.64	-2.1
51,512	-	apaG	b0050	0.75	-3.9
51,514	-	apaG	b0050	0.75	-0.8
51,520	-	apaG	b0050	0.77	+1.6
51,524	+	apaG	b0050	0.78	-3.3
51,550	-	apaG	b0050	0.85	-1.9
51,560	+	apaG	b0050	0.88	-1.0
51,567	-	apaG	b0050	0.89	+0.1
51,567	-	apaG	b0050	0.89	-1.8
51,576	+				-2.0
51,576	+				-3.4
51,586	-				+0.1
51,613	+				-3.2
51,614	-				-0.7
51,615	+				-2.2
51,615	+				+0.6
51,673	-				-2.2
51,703	+	ksgA	b0051	0.11	-0.7
51,703	+	ksgA	b0051	0.11	-1.8
51,812	-	ksgA	b0051	0.25	-2.1
51,836	+	ksgA	b0051	0.28	-1.6
51,891	-	ksgA	b0051	0.34	-1.8
51,891	-	ksgA	b0051	0.34	-1.7
51,904	+	ksgA	b0051	0.36	-2.0
51,906	+	ksgA	b0051	0.36	-0.9
51,925	-	ksgA	b0051	0.38	-1.7
52,040	+	ksgA	b0051	0.52	-2.5
52,040	+	ksgA	b0051	0.52	-1.4
52,040	+	ksgA	b0051	0.52	-1.1
52,042	+	ksgA	b0051	0.53	-3.1
52,042	+	ksgA	b0051	0.53	-1.4
52,042	+	ksgA	b0051	0.53	-1.9
52,042	-	ksgA	b0051	0.53	-0.5
52,042	-	ksgA	b0051	0.53	-1.7
52,045	+	ksgA	b0051	0.53	-2.2
52,062	+	ksgA	b0051	0.55	-2.2
52,062	+				+0.1
52,070	-	ksgA	b0051	0.56	-0.9
52,072	+	ksgA	b0051	0.56	-0.5
52,089	-	ksgA	b0051	0.58	-0.5
52,276	+	ksgA	b0051	0.81	-0.2
52,276	+	ksgA	b0051	0.81	-2.9
52,284	+	ksgA	b0051	0.82	-2.7
52,338	+	ksgA	b0051	0.89	-0.2
52,338	+	ksgA	b0051	0.89	-1.4
52,343	-	ksgA	b0051	0.89	-2.3
52,348	-				-1.1
52,348	-				+1.7
52,348	-				-3.0
52,354	+				-2.3
52,420	-				+1.4
52,490	+				-1.8
52,490	+				-1.5
52,502	+				-2.8
52,502	+				-2.8
52,518	-				-0.4
52,518	-				-3.4
52,626	+	pdxA	b0052	0.20	-0.8
52,688	-	pdxA	b0052	0.26	-0.4
52,735	+	pdxA	b0052	0.31	-3.1
52,735	+	pdxA	b0052	0.31	-2.4
52,740	-	pdxA	b0052	0.32	+0.5
52,766	-	pdxA	b0052	0.34	-0.7
52,780	-	pdxA	b0052	0.36	-3.6
52,797	-	pdxA	b0052	0.37	-1.1
52,879	-	pdxA	b0052	0.46	+0.4
52,914	+	pdxA	b0052	0.49	-2.9
52,982	-	pdxA	b0052	0.56	-3.2
52,982	-	pdxA	b0052	0.56	+0.4
52,983	+	pdxA	b0052	0.56	-1.2
53,061	-	pdxA	b0052	0.64	+0.2
53,062	-	pdxA	b0052	0.64	-0.1
53,062	-				+2.1
53,064	+	pdxA	b0052	0.64	+1.2
53,067	-	pdxA	b0052	0.65	-3.0
53,163	-	pdxA	b0052	0.74	-0.1
53,163	-	pdxA	b0052	0.74	+0.4
53,181	-	pdxA	b0052	0.76	+2.1
53,181	-	pdxA	b0052	0.76	+0.4
53,202	-	pdxA	b0052	0.78	-3.4
53,221	+	pdxA	b0052	0.80	-1.6
53,221	+	pdxA	b0052	0.80	+0.1
53,226	-	pdxA	b0052	0.81	-1.5
53,246	-	pdxA	b0052	0.83	-0.5
53,291	+	pdxA	b0052	0.87	-3.4
53,328	+				-4.7
53,328	+				+0.1
53,338	+				-3.8
53,338	+				-1.8
53,338	+				-1.0
53,338	+				+0.6
53,346	-				-1.8
53,346	-				+0.0
53,346	-				-0.6