Strain Fitness in Escherichia coli BW25113 around b1987

Experiment: NoPredeControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeO and asnU are separated by 160 nucleotidesasnU and cbl are separated by 37 nucleotidescbl and nac are separated by 101 nucleotides b1985: yeeO - predicted multidrug efflux system (RefSeq), at 2,056,227 to 2,057,714 yeeO b1986: asnU - tRNA-Asn (NCBI), at 2,057,875 to 2,057,950 asnU b1987: cbl - DNA-binding transcriptional activator of cysteine biosynthesis (NCBI), at 2,057,988 to 2,058,938 cbl b1988: nac - DNA-binding transcriptional dual regulator of nitrogen assimilation (NCBI), at 2,059,040 to 2,059,957 nac Position (kb) 2057 2058 2059Strain fitness (log2 ratio) -3 -2 -1 0 1at 2057.027 kb on + strand, within yeeOat 2057.027 kb on + strand, within yeeOat 2057.033 kb on + strand, within yeeOat 2057.035 kb on - strand, within yeeOat 2057.120 kb on - strand, within yeeOat 2057.151 kb on - strand, within yeeOat 2057.181 kb on - strand, within yeeOat 2057.181 kb on - strand, within yeeOat 2057.206 kb on - strand, within yeeOat 2057.213 kb on - strand, within yeeOat 2057.213 kb on - strand, within yeeOat 2057.232 kb on - strand, within yeeOat 2057.367 kb on - strand, within yeeOat 2057.585 kb on + strandat 2057.849 kb on + strandat 2058.044 kb on + strandat 2058.057 kb on - strandat 2058.057 kb on - strandat 2058.093 kb on + strand, within cblat 2058.094 kb on - strand, within cblat 2058.096 kb on - strand, within cblat 2058.096 kb on - strand, within cblat 2058.123 kb on + strand, within cblat 2058.218 kb on - strand, within cblat 2058.275 kb on + strand, within cblat 2058.575 kb on - strand, within cblat 2058.618 kb on + strand, within cblat 2058.644 kb on + strand, within cblat 2058.755 kb on + strand, within cblat 2058.755 kb on + strand, within cblat 2058.755 kb on + strand, within cblat 2058.813 kb on + strand, within cblat 2058.814 kb on + strand, within cblat 2058.891 kb on + strandat 2058.947 kb on - strandat 2059.036 kb on + strandat 2059.095 kb on - strandat 2059.095 kb on - strandat 2059.170 kb on + strand, within nacat 2059.188 kb on - strand, within nacat 2059.402 kb on + strand, within nacat 2059.487 kb on + strand, within nacat 2059.541 kb on - strand, within nacat 2059.584 kb on + strand, within nacat 2059.584 kb on + strand, within nacat 2059.643 kb on + strand, within nacat 2059.714 kb on - strand, within nacat 2059.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPredeControl
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2,057,027 + yeeO b1985 0.54 +0.8
2,057,027 + yeeO b1985 0.54 +0.8
2,057,033 + yeeO b1985 0.54 +0.2
2,057,035 - yeeO b1985 0.54 -0.2
2,057,120 - yeeO b1985 0.60 -0.5
2,057,151 - yeeO b1985 0.62 -0.1
2,057,181 - yeeO b1985 0.64 -3.3
2,057,181 - yeeO b1985 0.64 -0.2
2,057,206 - yeeO b1985 0.66 -0.1
2,057,213 - yeeO b1985 0.66 -0.1
2,057,213 - yeeO b1985 0.66 -0.4
2,057,232 - yeeO b1985 0.68 +0.3
2,057,367 - yeeO b1985 0.77 +0.1
2,057,585 + -0.1
2,057,849 + +0.4
2,058,044 + +0.3
2,058,057 - -0.5
2,058,057 - -0.4
2,058,093 + cbl b1987 0.11 -1.8
2,058,094 - cbl b1987 0.11 -0.1
2,058,096 - cbl b1987 0.11 -2.2
2,058,096 - cbl b1987 0.11 +0.1
2,058,123 + cbl b1987 0.14 -0.3
2,058,218 - cbl b1987 0.24 -2.8
2,058,275 + cbl b1987 0.30 -1.4
2,058,575 - cbl b1987 0.62 -0.9
2,058,618 + cbl b1987 0.66 +0.3
2,058,644 + cbl b1987 0.69 +0.1
2,058,755 + cbl b1987 0.81 -1.2
2,058,755 + cbl b1987 0.81 -1.6
2,058,755 + cbl b1987 0.81 -0.9
2,058,813 + cbl b1987 0.87 -0.8
2,058,814 + cbl b1987 0.87 +0.7
2,058,891 + +0.6
2,058,947 - +0.0
2,059,036 + -0.7
2,059,095 - +0.3
2,059,095 - -0.3
2,059,170 + nac b1988 0.14 -0.6
2,059,188 - nac b1988 0.16 -0.5
2,059,402 + nac b1988 0.39 -0.1
2,059,487 + nac b1988 0.49 -1.2
2,059,541 - nac b1988 0.55 -0.0
2,059,584 + nac b1988 0.59 -0.4
2,059,584 + nac b1988 0.59 -0.2
2,059,643 + nac b1988 0.66 +0.4
2,059,714 - nac b1988 0.73 -0.5
2,059,896 + +0.4

Or see this region's nucleotide sequence