Experiment: a-Ketoglutaric (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00865 and PFR28_00866 overlap by 4 nucleotides PFR28_00866 and PFR28_00867 are separated by 94 nucleotides PFR28_00867 and PFR28_00868 overlap by 4 nucleotides PFR28_00868 and PFR28_00869 overlap by 4 nucleotides PFR28_00869 and PFR28_00870 are separated by 3 nucleotides
PFR28_00865: PFR28_00865 - Cytochrome c biogenesis ATP-binding export protein CcmA, at 937,629 to 938,216
_00865
PFR28_00866: PFR28_00866 - Heme exporter protein B, at 938,213 to 938,881
_00866
PFR28_00867: PFR28_00867 - Heme exporter protein C, at 938,976 to 939,731
_00867
PFR28_00868: PFR28_00868 - hypothetical protein, at 939,728 to 939,904
_00868
PFR28_00869: PFR28_00869 - Cytochrome c-type biogenesis protein CcmE, at 939,901 to 940,356
_00869
PFR28_00870: PFR28_00870 - Cytochrome c-type biogenesis protein CcmF, at 940,360 to 942,348
_00870
Position (kb)
938
939
940 Strain fitness (log2 ratio)
-1
0
1 at 938.879 kb on + strand at 938.879 kb on + strand at 938.879 kb on + strand at 938.882 kb on + strand at 938.882 kb on + strand at 938.882 kb on + strand at 938.882 kb on + strand at 938.886 kb on + strand at 938.921 kb on + strand at 938.921 kb on + strand at 939.703 kb on + strand at 939.703 kb on + strand at 939.703 kb on + strand at 940.375 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) 10 mM remove 938,879 + +0.6 938,879 + -0.0 938,879 + +0.1 938,882 + +0.7 938,882 + -0.3 938,882 + +0.2 938,882 + -0.6 938,886 + -0.1 938,921 + +0.2 938,921 + +1.6 939,703 + +0.1 939,703 + +0.3 939,703 + +0.7 940,375 + -0.3
Or see this region's nucleotide sequence