Strain Fitness in Pseudomonas sp. RS175 around PFR28_00867

Experiment: a-Ketoglutaric (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00865 and PFR28_00866 overlap by 4 nucleotidesPFR28_00866 and PFR28_00867 are separated by 94 nucleotidesPFR28_00867 and PFR28_00868 overlap by 4 nucleotidesPFR28_00868 and PFR28_00869 overlap by 4 nucleotidesPFR28_00869 and PFR28_00870 are separated by 3 nucleotides PFR28_00865: PFR28_00865 - Cytochrome c biogenesis ATP-binding export protein CcmA, at 937,629 to 938,216 _00865 PFR28_00866: PFR28_00866 - Heme exporter protein B, at 938,213 to 938,881 _00866 PFR28_00867: PFR28_00867 - Heme exporter protein C, at 938,976 to 939,731 _00867 PFR28_00868: PFR28_00868 - hypothetical protein, at 939,728 to 939,904 _00868 PFR28_00869: PFR28_00869 - Cytochrome c-type biogenesis protein CcmE, at 939,901 to 940,356 _00869 PFR28_00870: PFR28_00870 - Cytochrome c-type biogenesis protein CcmF, at 940,360 to 942,348 _00870 Position (kb) 938 939 940Strain fitness (log2 ratio) -1 0 1at 938.879 kb on + strandat 938.879 kb on + strandat 938.879 kb on + strandat 938.882 kb on + strandat 938.882 kb on + strandat 938.882 kb on + strandat 938.882 kb on + strandat 938.886 kb on + strandat 938.921 kb on + strandat 938.921 kb on + strandat 939.703 kb on + strandat 939.703 kb on + strandat 939.703 kb on + strandat 940.375 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) 10 mM
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938,879 + +0.6
938,879 + -0.0
938,879 + +0.1
938,882 + +0.7
938,882 + -0.3
938,882 + +0.2
938,882 + -0.6
938,886 + -0.1
938,921 + +0.2
938,921 + +1.6
939,703 + +0.1
939,703 + +0.3
939,703 + +0.7
940,375 + -0.3

Or see this region's nucleotide sequence