Experiment: propionate (C) 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00600 and PFR28_00601 are separated by 67 nucleotides PFR28_00601 and PFR28_00602 are separated by 27 nucleotides PFR28_00602 and PFR28_00603 overlap by 1 nucleotides PFR28_00603 and PFR28_00604 are separated by 270 nucleotides
PFR28_00600: PFR28_00600 - hypothetical protein, at 639,425 to 639,859
_00600
PFR28_00601: PFR28_00601 - hypothetical protein, at 639,927 to 640,271
_00601
PFR28_00602: PFR28_00602 - hypothetical protein, at 640,299 to 640,775
_00602
PFR28_00603: PFR28_00603 - hypothetical protein, at 640,775 to 642,013
_00603
PFR28_00604: PFR28_00604 - hypothetical protein, at 642,284 to 643,627
_00604
Position (kb) 640
641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 639.879 kb on + strand at 639.880 kb on - strand at 639.880 kb on - strand at 639.880 kb on - strand at 639.880 kb on - strand at 639.897 kb on + strand at 639.897 kb on + strand at 639.898 kb on - strand at 639.898 kb on - strand at 639.898 kb on - strand at 639.898 kb on - strand at 639.898 kb on - strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.937 kb on + strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.938 kb on - strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.948 kb on + strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.949 kb on - strand at 639.950 kb on + strand at 639.950 kb on + strand at 639.950 kb on + strand at 639.950 kb on + strand at 639.950 kb on + strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 639.951 kb on - strand at 640.012 kb on - strand, within PFR28_00601 at 640.161 kb on + strand, within PFR28_00601 at 640.162 kb on - strand, within PFR28_00601 at 640.162 kb on - strand, within PFR28_00601 at 640.162 kb on - strand, within PFR28_00601 at 640.503 kb on + strand, within PFR28_00602 at 640.647 kb on + strand, within PFR28_00602 at 640.814 kb on + strand at 640.815 kb on - strand at 641.345 kb on + strand, within PFR28_00603 at 641.345 kb on + strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.346 kb on - strand, within PFR28_00603 at 641.366 kb on + strand, within PFR28_00603 at 641.367 kb on - strand, within PFR28_00603 at 641.367 kb on - strand, within PFR28_00603 at 641.367 kb on - strand, within PFR28_00603 at 641.623 kb on + strand, within PFR28_00603 at 641.623 kb on + strand, within PFR28_00603 at 641.642 kb on + strand, within PFR28_00603 at 641.643 kb on - strand, within PFR28_00603 at 641.724 kb on + strand, within PFR28_00603 at 641.725 kb on - strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.726 kb on + strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.727 kb on - strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.733 kb on + strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.734 kb on - strand, within PFR28_00603 at 641.862 kb on - strand, within PFR28_00603 at 641.873 kb on + strand, within PFR28_00603 at 642.132 kb on + strand at 642.132 kb on + strand at 642.158 kb on + strand at 642.158 kb on + strand at 642.158 kb on + strand at 642.158 kb on + strand at 642.158 kb on + strand at 642.158 kb on + strand at 642.158 kb on + strand at 642.159 kb on - strand at 642.159 kb on - strand at 642.159 kb on - strand at 642.159 kb on - strand at 642.159 kb on - strand at 642.175 kb on - strand at 642.175 kb on - strand at 642.190 kb on + strand at 642.190 kb on + strand at 642.190 kb on + strand at 642.190 kb on + strand at 642.190 kb on + strand at 642.191 kb on - strand at 642.191 kb on - strand at 642.191 kb on - strand at 642.191 kb on - strand at 642.191 kb on - strand at 642.439 kb on - strand, within PFR28_00604 at 642.439 kb on - strand, within PFR28_00604 at 642.594 kb on + strand, within PFR28_00604 at 642.595 kb on - strand, within PFR28_00604 at 642.606 kb on + strand, within PFR28_00604 at 642.613 kb on + strand, within PFR28_00604 at 642.613 kb on + strand, within PFR28_00604 at 642.613 kb on + strand, within PFR28_00604 at 642.614 kb on - strand, within PFR28_00604 at 642.614 kb on - strand, within PFR28_00604 at 642.614 kb on - strand, within PFR28_00604 at 642.614 kb on - strand, within PFR28_00604 at 642.614 kb on - strand, within PFR28_00604 at 642.614 kb on - strand, within PFR28_00604 at 642.614 kb on - strand, within PFR28_00604 at 642.614 kb on - strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.617 kb on + strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.618 kb on - strand, within PFR28_00604 at 642.633 kb on + strand, within PFR28_00604 at 642.633 kb on + strand, within PFR28_00604 at 642.633 kb on + strand, within PFR28_00604 at 642.634 kb on - strand, within PFR28_00604 at 642.634 kb on - strand, within PFR28_00604 at 642.634 kb on - strand, within PFR28_00604 at 642.645 kb on + strand, within PFR28_00604 at 642.811 kb on - strand, within PFR28_00604 at 642.891 kb on + strand, within PFR28_00604 at 642.892 kb on - strand, within PFR28_00604 at 642.892 kb on - strand, within PFR28_00604 at 642.942 kb on + strand, within PFR28_00604 at 642.943 kb on - strand, within PFR28_00604
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) 20 mM remove 639,879 + -0.4 639,880 - -0.3 639,880 - -0.0 639,880 - -0.3 639,880 - -0.8 639,897 + -2.3 639,897 + -0.8 639,898 - +1.1 639,898 - -0.3 639,898 - -0.7 639,898 - +0.4 639,898 - +0.0 639,933 + +0.4 639,933 + +0.2 639,933 + -0.4 639,933 + +0.6 639,933 + +0.3 639,933 + +1.1 639,933 + -0.4 639,933 + +1.5 639,933 + +0.4 639,933 + +0.5 639,933 + +0.1 639,934 - -1.3 639,934 - +0.7 639,934 - -0.3 639,934 - -0.8 639,934 - -0.8 639,934 - -0.7 639,937 + +0.2 639,937 + +0.7 639,937 + -0.6 639,937 + +1.7 639,937 + -0.3 639,937 + +1.5 639,937 + -3.4 639,937 + +0.3 639,937 + -0.3 639,937 + -0.4 639,937 + -0.0 639,937 + -1.4 639,937 + -0.2 639,937 + -0.3 639,938 - -0.6 639,938 - -0.7 639,938 - -2.6 639,938 - +0.7 639,938 - -2.5 639,938 - -0.3 639,938 - +0.8 639,938 - -0.6 639,938 - -0.8 639,938 - +0.2 639,948 + +1.5 639,948 + -0.2 639,948 + +0.5 639,948 + -0.6 639,948 + +1.5 639,948 + -0.1 639,949 - -0.1 639,949 - +0.6 639,949 - +1.2 639,949 - -1.1 639,949 - +0.4 639,949 - -0.7 639,949 - -0.9 639,949 - +0.6 639,949 - +0.8 639,949 - -0.4 639,949 - +1.1 639,949 - -1.3 639,949 - +0.8 639,949 - -0.5 639,950 + +0.3 639,950 + +0.2 639,950 + -0.8 639,950 + +0.7 639,950 + -0.2 639,951 - -1.2 639,951 - -0.5 639,951 - +0.0 639,951 - +0.2 639,951 - +0.3 639,951 - +0.6 639,951 - -0.4 639,951 - -1.0 640,012 - PFR28_00601 0.25 -0.5 640,161 + PFR28_00601 0.68 -0.5 640,162 - PFR28_00601 0.68 +1.5 640,162 - PFR28_00601 0.68 -0.7 640,162 - PFR28_00601 0.68 -0.3 640,503 + PFR28_00602 0.43 -0.5 640,647 + PFR28_00602 0.73 +0.4 640,814 + -0.5 640,815 - -1.0 641,345 + PFR28_00603 0.46 -0.3 641,345 + PFR28_00603 0.46 -0.5 641,346 - PFR28_00603 0.46 -0.8 641,346 - PFR28_00603 0.46 -0.5 641,346 - PFR28_00603 0.46 +1.0 641,346 - PFR28_00603 0.46 +0.1 641,346 - PFR28_00603 0.46 -0.9 641,346 - PFR28_00603 0.46 -0.4 641,366 + PFR28_00603 0.48 +0.0 641,367 - PFR28_00603 0.48 -1.2 641,367 - PFR28_00603 0.48 -0.5 641,367 - PFR28_00603 0.48 -0.1 641,623 + PFR28_00603 0.68 -1.2 641,623 + PFR28_00603 0.68 -0.8 641,642 + PFR28_00603 0.70 +0.4 641,643 - PFR28_00603 0.70 -0.2 641,724 + PFR28_00603 0.77 -0.0 641,725 - PFR28_00603 0.77 +1.9 641,726 + PFR28_00603 0.77 +0.3 641,726 + PFR28_00603 0.77 +0.2 641,726 + PFR28_00603 0.77 -0.8 641,726 + PFR28_00603 0.77 -0.1 641,726 + PFR28_00603 0.77 +0.7 641,726 + PFR28_00603 0.77 -0.8 641,726 + PFR28_00603 0.77 +0.1 641,726 + PFR28_00603 0.77 -0.0 641,726 + PFR28_00603 0.77 -2.0 641,726 + PFR28_00603 0.77 +0.5 641,726 + PFR28_00603 0.77 -0.5 641,727 - PFR28_00603 0.77 -0.4 641,727 - PFR28_00603 0.77 -0.0 641,727 - PFR28_00603 0.77 +1.5 641,727 - PFR28_00603 0.77 +0.5 641,727 - PFR28_00603 0.77 +0.6 641,733 + PFR28_00603 0.77 -0.3 641,733 + PFR28_00603 0.77 +0.7 641,733 + PFR28_00603 0.77 +0.6 641,733 + PFR28_00603 0.77 +0.8 641,733 + PFR28_00603 0.77 -0.3 641,733 + PFR28_00603 0.77 +0.8 641,733 + PFR28_00603 0.77 +0.3 641,734 - PFR28_00603 0.77 -0.9 641,734 - PFR28_00603 0.77 +0.6 641,734 - PFR28_00603 0.77 -0.1 641,734 - PFR28_00603 0.77 +0.7 641,734 - PFR28_00603 0.77 -0.7 641,734 - PFR28_00603 0.77 +0.8 641,734 - PFR28_00603 0.77 +1.3 641,734 - PFR28_00603 0.77 +0.5 641,734 - PFR28_00603 0.77 -0.1 641,734 - PFR28_00603 0.77 +0.0 641,862 - PFR28_00603 0.88 +0.8 641,873 + PFR28_00603 0.89 +0.8 642,132 + -0.2 642,132 + -0.3 642,158 + +0.3 642,158 + +0.5 642,158 + -0.4 642,158 + +0.8 642,158 + +0.7 642,158 + -0.9 642,158 + -0.4 642,159 - -0.6 642,159 - -0.0 642,159 - +0.4 642,159 - +1.3 642,159 - +0.2 642,175 - +0.6 642,175 - -0.7 642,190 + +0.7 642,190 + +0.3 642,190 + -0.1 642,190 + -1.7 642,190 + +0.4 642,191 - -0.1 642,191 - +0.5 642,191 - +1.1 642,191 - +0.4 642,191 - +0.8 642,439 - PFR28_00604 0.12 -0.1 642,439 - PFR28_00604 0.12 +0.3 642,594 + PFR28_00604 0.23 -0.9 642,595 - PFR28_00604 0.23 -0.8 642,606 + PFR28_00604 0.24 -0.4 642,613 + PFR28_00604 0.24 -1.3 642,613 + PFR28_00604 0.24 -0.1 642,613 + PFR28_00604 0.24 +1.5 642,614 - PFR28_00604 0.25 -0.6 642,614 - PFR28_00604 0.25 -1.0 642,614 - PFR28_00604 0.25 -0.1 642,614 - PFR28_00604 0.25 +0.2 642,614 - PFR28_00604 0.25 -1.1 642,614 - PFR28_00604 0.25 +0.1 642,614 - PFR28_00604 0.25 -1.1 642,614 - PFR28_00604 0.25 +0.2 642,617 + PFR28_00604 0.25 +1.2 642,617 + PFR28_00604 0.25 +0.3 642,617 + PFR28_00604 0.25 +0.4 642,617 + PFR28_00604 0.25 -0.8 642,617 + PFR28_00604 0.25 -1.0 642,617 + PFR28_00604 0.25 +0.4 642,617 + PFR28_00604 0.25 +0.3 642,617 + PFR28_00604 0.25 +0.3 642,617 + PFR28_00604 0.25 -2.2 642,617 + PFR28_00604 0.25 +0.5 642,618 - PFR28_00604 0.25 +0.7 642,618 - PFR28_00604 0.25 +1.1 642,618 - PFR28_00604 0.25 +1.2 642,618 - PFR28_00604 0.25 -0.3 642,618 - PFR28_00604 0.25 -0.6 642,618 - PFR28_00604 0.25 -0.8 642,618 - PFR28_00604 0.25 -3.3 642,618 - PFR28_00604 0.25 -0.2 642,618 - PFR28_00604 0.25 -0.8 642,618 - PFR28_00604 0.25 -0.0 642,618 - PFR28_00604 0.25 -1.8 642,618 - PFR28_00604 0.25 -0.1 642,633 + PFR28_00604 0.26 -0.5 642,633 + PFR28_00604 0.26 +0.7 642,633 + PFR28_00604 0.26 +0.7 642,634 - PFR28_00604 0.26 +0.4 642,634 - PFR28_00604 0.26 +0.3 642,634 - PFR28_00604 0.26 +0.3 642,645 + PFR28_00604 0.27 +1.2 642,811 - PFR28_00604 0.39 -0.7 642,891 + PFR28_00604 0.45 -0.4 642,892 - PFR28_00604 0.45 +0.2 642,892 - PFR28_00604 0.45 +0.2 642,942 + PFR28_00604 0.49 +0.5 642,943 - PFR28_00604 0.49 +0.9
Or see this region's nucleotide sequence