Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01034

Experiment: BR1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01033 and OHPLBJKB_01034 are separated by 144 nucleotidesOHPLBJKB_01034 and OHPLBJKB_01035 are separated by 79 nucleotides OHPLBJKB_01033: OHPLBJKB_01033 - Membrane-bound lytic murein transglycosylase B, at 1,067,803 to 1,068,993 _01033 OHPLBJKB_01034: OHPLBJKB_01034 - Nicotinamide-nucleotide amidohydrolase PncC, at 1,069,138 to 1,069,635 _01034 OHPLBJKB_01035: OHPLBJKB_01035 - Protein RecA, at 1,069,715 to 1,070,776 _01035 Position (kb) 1069 1070Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1068.270 kb on + strand, within OHPLBJKB_01033at 1068.273 kb on + strand, within OHPLBJKB_01033at 1068.316 kb on + strand, within OHPLBJKB_01033at 1068.317 kb on - strand, within OHPLBJKB_01033at 1068.349 kb on + strand, within OHPLBJKB_01033at 1068.349 kb on + strand, within OHPLBJKB_01033at 1068.349 kb on + strand, within OHPLBJKB_01033at 1068.349 kb on + strand, within OHPLBJKB_01033at 1068.349 kb on + strand, within OHPLBJKB_01033at 1068.350 kb on - strand, within OHPLBJKB_01033at 1068.350 kb on - strand, within OHPLBJKB_01033at 1068.456 kb on + strand, within OHPLBJKB_01033at 1068.456 kb on + strand, within OHPLBJKB_01033at 1068.456 kb on + strand, within OHPLBJKB_01033at 1068.456 kb on + strand, within OHPLBJKB_01033at 1068.456 kb on + strand, within OHPLBJKB_01033at 1068.457 kb on - strand, within OHPLBJKB_01033at 1068.457 kb on - strand, within OHPLBJKB_01033at 1068.457 kb on - strand, within OHPLBJKB_01033at 1068.457 kb on - strand, within OHPLBJKB_01033at 1068.457 kb on - strand, within OHPLBJKB_01033at 1068.457 kb on - strand, within OHPLBJKB_01033at 1068.461 kb on - strand, within OHPLBJKB_01033at 1068.478 kb on + strand, within OHPLBJKB_01033at 1068.585 kb on + strand, within OHPLBJKB_01033at 1068.585 kb on + strand, within OHPLBJKB_01033at 1068.586 kb on - strand, within OHPLBJKB_01033at 1068.586 kb on - strand, within OHPLBJKB_01033at 1068.586 kb on - strand, within OHPLBJKB_01033at 1068.598 kb on + strand, within OHPLBJKB_01033at 1068.598 kb on + strand, within OHPLBJKB_01033at 1068.599 kb on - strand, within OHPLBJKB_01033at 1068.607 kb on + strand, within OHPLBJKB_01033at 1068.608 kb on - strand, within OHPLBJKB_01033at 1068.608 kb on - strand, within OHPLBJKB_01033at 1068.636 kb on + strand, within OHPLBJKB_01033at 1068.636 kb on + strand, within OHPLBJKB_01033at 1068.637 kb on - strand, within OHPLBJKB_01033at 1068.682 kb on + strand, within OHPLBJKB_01033at 1068.683 kb on - strand, within OHPLBJKB_01033at 1068.771 kb on + strand, within OHPLBJKB_01033at 1068.771 kb on + strand, within OHPLBJKB_01033at 1068.771 kb on + strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.775 kb on + strand, within OHPLBJKB_01033at 1068.775 kb on + strand, within OHPLBJKB_01033at 1068.776 kb on - strand, within OHPLBJKB_01033at 1068.776 kb on - strand, within OHPLBJKB_01033at 1068.776 kb on - strand, within OHPLBJKB_01033at 1068.807 kb on - strand, within OHPLBJKB_01033at 1068.904 kb on + strandat 1068.904 kb on + strandat 1068.904 kb on + strandat 1068.905 kb on - strandat 1068.905 kb on - strandat 1068.905 kb on - strandat 1068.959 kb on + strandat 1068.960 kb on - strandat 1068.960 kb on - strandat 1068.960 kb on - strandat 1068.960 kb on - strandat 1068.986 kb on + strandat 1068.986 kb on + strandat 1068.986 kb on + strandat 1068.986 kb on + strandat 1068.987 kb on - strandat 1068.987 kb on - strandat 1068.987 kb on - strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.995 kb on + strandat 1068.995 kb on + strandat 1068.995 kb on + strandat 1068.995 kb on + strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.999 kb on + strandat 1068.999 kb on + strandat 1069.000 kb on - strandat 1069.098 kb on + strandat 1069.098 kb on + strandat 1069.098 kb on + strandat 1069.099 kb on - strandat 1069.164 kb on - strandat 1069.164 kb on - strandat 1069.208 kb on + strand, within OHPLBJKB_01034at 1069.208 kb on + strand, within OHPLBJKB_01034at 1069.227 kb on + strand, within OHPLBJKB_01034at 1069.254 kb on + strand, within OHPLBJKB_01034at 1069.303 kb on + strand, within OHPLBJKB_01034at 1069.303 kb on + strand, within OHPLBJKB_01034at 1069.303 kb on + strand, within OHPLBJKB_01034at 1069.303 kb on + strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.429 kb on + strand, within OHPLBJKB_01034at 1069.440 kb on + strand, within OHPLBJKB_01034at 1069.440 kb on + strand, within OHPLBJKB_01034at 1069.441 kb on - strand, within OHPLBJKB_01034at 1069.441 kb on - strand, within OHPLBJKB_01034at 1069.441 kb on - strand, within OHPLBJKB_01034at 1069.441 kb on - strand, within OHPLBJKB_01034at 1069.443 kb on + strand, within OHPLBJKB_01034at 1069.444 kb on - strand, within OHPLBJKB_01034at 1069.444 kb on - strand, within OHPLBJKB_01034at 1069.592 kb on - strandat 1069.592 kb on - strandat 1069.592 kb on - strandat 1069.622 kb on + strandat 1069.675 kb on + strandat 1069.675 kb on + strandat 1069.676 kb on - strandat 1069.689 kb on + strandat 1070.024 kb on + strand, within OHPLBJKB_01035at 1070.024 kb on + strand, within OHPLBJKB_01035at 1070.025 kb on - strand, within OHPLBJKB_01035at 1070.224 kb on + strand, within OHPLBJKB_01035at 1070.224 kb on + strand, within OHPLBJKB_01035at 1070.225 kb on - strand, within OHPLBJKB_01035at 1070.225 kb on - strand, within OHPLBJKB_01035at 1070.245 kb on + strand, within OHPLBJKB_01035at 1070.370 kb on - strand, within OHPLBJKB_01035at 1070.370 kb on - strand, within OHPLBJKB_01035at 1070.518 kb on + strand, within OHPLBJKB_01035at 1070.519 kb on - strand, within OHPLBJKB_01035at 1070.594 kb on + strand, within OHPLBJKB_01035at 1070.595 kb on - strand, within OHPLBJKB_01035

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Per-strain Table

Position Strand Gene LocusTag Fraction BR1
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1,068,270 + OHPLBJKB_01033 0.39 +0.0
1,068,273 + OHPLBJKB_01033 0.39 +0.3
1,068,316 + OHPLBJKB_01033 0.43 -1.2
1,068,317 - OHPLBJKB_01033 0.43 -1.7
1,068,349 + OHPLBJKB_01033 0.46 -1.5
1,068,349 + OHPLBJKB_01033 0.46 +0.9
1,068,349 + OHPLBJKB_01033 0.46 -0.1
1,068,349 + OHPLBJKB_01033 0.46 +0.4
1,068,349 + OHPLBJKB_01033 0.46 +1.1
1,068,350 - OHPLBJKB_01033 0.46 -2.3
1,068,350 - OHPLBJKB_01033 0.46 +0.2
1,068,456 + OHPLBJKB_01033 0.55 +1.8
1,068,456 + OHPLBJKB_01033 0.55 -2.1
1,068,456 + OHPLBJKB_01033 0.55 -0.6
1,068,456 + OHPLBJKB_01033 0.55 -1.4
1,068,456 + OHPLBJKB_01033 0.55 -0.6
1,068,457 - OHPLBJKB_01033 0.55 -1.3
1,068,457 - OHPLBJKB_01033 0.55 +3.4
1,068,457 - OHPLBJKB_01033 0.55 -0.2
1,068,457 - OHPLBJKB_01033 0.55 -1.0
1,068,457 - OHPLBJKB_01033 0.55 -3.3
1,068,457 - OHPLBJKB_01033 0.55 -0.6
1,068,461 - OHPLBJKB_01033 0.55 +0.4
1,068,478 + OHPLBJKB_01033 0.57 -0.3
1,068,585 + OHPLBJKB_01033 0.66 +0.0
1,068,585 + OHPLBJKB_01033 0.66 -0.3
1,068,586 - OHPLBJKB_01033 0.66 -0.5
1,068,586 - OHPLBJKB_01033 0.66 -1.6
1,068,586 - OHPLBJKB_01033 0.66 +0.6
1,068,598 + OHPLBJKB_01033 0.67 -1.5
1,068,598 + OHPLBJKB_01033 0.67 +1.1
1,068,599 - OHPLBJKB_01033 0.67 +1.2
1,068,607 + OHPLBJKB_01033 0.68 +0.7
1,068,608 - OHPLBJKB_01033 0.68 +2.1
1,068,608 - OHPLBJKB_01033 0.68 -0.2
1,068,636 + OHPLBJKB_01033 0.70 +0.4
1,068,636 + OHPLBJKB_01033 0.70 -0.6
1,068,637 - OHPLBJKB_01033 0.70 -0.3
1,068,682 + OHPLBJKB_01033 0.74 -0.7
1,068,683 - OHPLBJKB_01033 0.74 -1.3
1,068,771 + OHPLBJKB_01033 0.81 -0.9
1,068,771 + OHPLBJKB_01033 0.81 +0.0
1,068,771 + OHPLBJKB_01033 0.81 +0.2
1,068,772 - OHPLBJKB_01033 0.81 -1.4
1,068,772 - OHPLBJKB_01033 0.81 -0.6
1,068,772 - OHPLBJKB_01033 0.81 -0.0
1,068,772 - OHPLBJKB_01033 0.81 -1.8
1,068,772 - OHPLBJKB_01033 0.81 +0.6
1,068,772 - OHPLBJKB_01033 0.81 +0.2
1,068,775 + OHPLBJKB_01033 0.82 -2.2
1,068,775 + OHPLBJKB_01033 0.82 -2.6
1,068,776 - OHPLBJKB_01033 0.82 +1.1
1,068,776 - OHPLBJKB_01033 0.82 +0.7
1,068,776 - OHPLBJKB_01033 0.82 +0.2
1,068,807 - OHPLBJKB_01033 0.84 -2.0
1,068,904 + -1.0
1,068,904 + -0.7
1,068,904 + -0.5
1,068,905 - -0.4
1,068,905 - -0.8
1,068,905 - +0.7
1,068,959 + -0.7
1,068,960 - +0.8
1,068,960 - -2.1
1,068,960 - -2.2
1,068,960 - +0.5
1,068,986 + +0.4
1,068,986 + +1.0
1,068,986 + -0.7
1,068,986 + -0.3
1,068,987 - -0.3
1,068,987 - +0.3
1,068,987 - +0.8
1,068,991 + -0.9
1,068,991 + +0.2
1,068,991 + +1.1
1,068,991 + +0.3
1,068,991 + +0.0
1,068,991 + +1.9
1,068,992 - -0.8
1,068,992 - -0.6
1,068,992 - -3.1
1,068,992 - -2.0
1,068,992 - +0.5
1,068,992 - +2.0
1,068,995 + +0.3
1,068,995 + -2.6
1,068,995 + -1.8
1,068,995 + -1.2
1,068,996 - -1.3
1,068,996 - +0.2
1,068,996 - -3.3
1,068,996 - -1.0
1,068,996 - +0.0
1,068,996 - +1.0
1,068,996 - -1.4
1,068,996 - -0.2
1,068,999 + +0.3
1,068,999 + -0.3
1,069,000 - -1.2
1,069,098 + -0.0
1,069,098 + +0.4
1,069,098 + +0.1
1,069,099 - +0.4
1,069,164 - -2.4
1,069,164 - -0.8
1,069,208 + OHPLBJKB_01034 0.14 -0.4
1,069,208 + OHPLBJKB_01034 0.14 -0.3
1,069,227 + OHPLBJKB_01034 0.18 +1.4
1,069,254 + OHPLBJKB_01034 0.23 +1.9
1,069,303 + OHPLBJKB_01034 0.33 -0.7
1,069,303 + OHPLBJKB_01034 0.33 +0.2
1,069,303 + OHPLBJKB_01034 0.33 -1.0
1,069,303 + OHPLBJKB_01034 0.33 +0.1
1,069,304 - OHPLBJKB_01034 0.33 -0.0
1,069,304 - OHPLBJKB_01034 0.33 -0.1
1,069,304 - OHPLBJKB_01034 0.33 +1.6
1,069,304 - OHPLBJKB_01034 0.33 -0.2
1,069,304 - OHPLBJKB_01034 0.33 +1.1
1,069,304 - OHPLBJKB_01034 0.33 -0.6
1,069,304 - OHPLBJKB_01034 0.33 +0.6
1,069,304 - OHPLBJKB_01034 0.33 +2.2
1,069,429 + OHPLBJKB_01034 0.58 +6.1
1,069,440 + OHPLBJKB_01034 0.61 -1.0
1,069,440 + OHPLBJKB_01034 0.61 +1.7
1,069,441 - OHPLBJKB_01034 0.61 +1.4
1,069,441 - OHPLBJKB_01034 0.61 -0.2
1,069,441 - OHPLBJKB_01034 0.61 +0.2
1,069,441 - OHPLBJKB_01034 0.61 -1.9
1,069,443 + OHPLBJKB_01034 0.61 -0.5
1,069,444 - OHPLBJKB_01034 0.61 +1.3
1,069,444 - OHPLBJKB_01034 0.61 -1.9
1,069,592 - +0.8
1,069,592 - +0.4
1,069,592 - -0.9
1,069,622 + +1.0
1,069,675 + +0.1
1,069,675 + -1.8
1,069,676 - -1.2
1,069,689 + +0.1
1,070,024 + OHPLBJKB_01035 0.29 -0.7
1,070,024 + OHPLBJKB_01035 0.29 -0.7
1,070,025 - OHPLBJKB_01035 0.29 -0.2
1,070,224 + OHPLBJKB_01035 0.48 +2.4
1,070,224 + OHPLBJKB_01035 0.48 +0.6
1,070,225 - OHPLBJKB_01035 0.48 -0.6
1,070,225 - OHPLBJKB_01035 0.48 -0.9
1,070,245 + OHPLBJKB_01035 0.50 +0.4
1,070,370 - OHPLBJKB_01035 0.62 -1.2
1,070,370 - OHPLBJKB_01035 0.62 -0.7
1,070,518 + OHPLBJKB_01035 0.76 +0.8
1,070,519 - OHPLBJKB_01035 0.76 -1.0
1,070,594 + OHPLBJKB_01035 0.83 +2.4
1,070,595 - OHPLBJKB_01035 0.83 -0.4

Or see this region's nucleotide sequence