Experiment: SP 10E1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00365 and OHPLBJKB_00366 are separated by 168 nucleotides OHPLBJKB_00366 and OHPLBJKB_00367 are separated by 71 nucleotides OHPLBJKB_00367 and OHPLBJKB_00368 are separated by 28 nucleotides
OHPLBJKB_00365: OHPLBJKB_00365 - putative bifunctional chitinase/lysozyme, at 396,705 to 399,398
_00365
OHPLBJKB_00366: OHPLBJKB_00366 - Bacterioferritin-associated ferredoxin, at 399,567 to 399,761
_00366
OHPLBJKB_00367: OHPLBJKB_00367 - Bacterioferritin, at 399,833 to 400,309
_00367
OHPLBJKB_00368: OHPLBJKB_00368 - Type 4 prepilin-like proteins leader peptide-processing enzyme, at 400,338 to 401,015
_00368
Position (kb) 399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 398.616 kb on - strand, within OHPLBJKB_00365 at 398.625 kb on + strand, within OHPLBJKB_00365 at 398.626 kb on - strand, within OHPLBJKB_00365 at 398.731 kb on + strand, within OHPLBJKB_00365 at 398.732 kb on - strand, within OHPLBJKB_00365 at 398.751 kb on + strand, within OHPLBJKB_00365 at 398.752 kb on - strand, within OHPLBJKB_00365 at 398.752 kb on - strand, within OHPLBJKB_00365 at 398.752 kb on - strand, within OHPLBJKB_00365 at 398.754 kb on + strand, within OHPLBJKB_00365 at 398.831 kb on + strand, within OHPLBJKB_00365 at 398.831 kb on + strand, within OHPLBJKB_00365 at 398.831 kb on + strand, within OHPLBJKB_00365 at 398.831 kb on + strand, within OHPLBJKB_00365 at 398.832 kb on - strand, within OHPLBJKB_00365 at 398.832 kb on - strand, within OHPLBJKB_00365 at 398.832 kb on - strand, within OHPLBJKB_00365 at 398.844 kb on - strand, within OHPLBJKB_00365 at 398.870 kb on + strand, within OHPLBJKB_00365 at 398.894 kb on + strand, within OHPLBJKB_00365 at 398.894 kb on + strand, within OHPLBJKB_00365 at 398.894 kb on + strand, within OHPLBJKB_00365 at 398.901 kb on - strand, within OHPLBJKB_00365 at 398.908 kb on - strand, within OHPLBJKB_00365 at 399.018 kb on + strand, within OHPLBJKB_00365 at 399.048 kb on - strand, within OHPLBJKB_00365 at 399.071 kb on + strand, within OHPLBJKB_00365 at 399.071 kb on + strand, within OHPLBJKB_00365 at 399.071 kb on + strand, within OHPLBJKB_00365 at 399.071 kb on + strand, within OHPLBJKB_00365 at 399.155 kb on + strand at 399.155 kb on + strand at 399.156 kb on - strand at 399.156 kb on - strand at 399.210 kb on + strand at 399.210 kb on + strand at 399.210 kb on + strand at 399.210 kb on + strand at 399.211 kb on - strand at 399.211 kb on - strand at 399.211 kb on - strand at 399.211 kb on - strand at 399.211 kb on - strand at 399.211 kb on - strand at 399.254 kb on + strand at 399.357 kb on + strand at 399.358 kb on - strand at 399.358 kb on - strand at 399.387 kb on - strand at 399.389 kb on + strand at 399.396 kb on + strand at 399.397 kb on - strand at 399.464 kb on + strand at 399.476 kb on + strand at 399.476 kb on + strand at 399.477 kb on - strand at 399.520 kb on + strand at 399.552 kb on + strand at 399.553 kb on - strand at 399.566 kb on + strand at 399.566 kb on + strand at 399.570 kb on + strand at 399.570 kb on + strand at 399.570 kb on + strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.571 kb on - strand at 399.584 kb on + strand at 399.584 kb on + strand at 399.584 kb on + strand at 399.585 kb on - strand at 399.727 kb on + strand, within OHPLBJKB_00366 at 399.727 kb on + strand, within OHPLBJKB_00366 at 399.727 kb on + strand, within OHPLBJKB_00366 at 399.727 kb on + strand, within OHPLBJKB_00366 at 399.782 kb on + strand at 399.798 kb on + strand at 399.847 kb on + strand at 399.847 kb on + strand at 399.848 kb on - strand at 399.855 kb on + strand at 399.855 kb on + strand at 399.856 kb on - strand at 399.860 kb on + strand at 400.004 kb on + strand, within OHPLBJKB_00367 at 400.006 kb on + strand, within OHPLBJKB_00367 at 400.006 kb on + strand, within OHPLBJKB_00367 at 400.006 kb on + strand, within OHPLBJKB_00367 at 400.007 kb on - strand, within OHPLBJKB_00367 at 400.007 kb on - strand, within OHPLBJKB_00367 at 400.007 kb on - strand, within OHPLBJKB_00367 at 400.044 kb on + strand, within OHPLBJKB_00367 at 400.045 kb on - strand, within OHPLBJKB_00367 at 400.151 kb on + strand, within OHPLBJKB_00367 at 400.173 kb on - strand, within OHPLBJKB_00367 at 400.339 kb on + strand at 400.342 kb on + strand at 400.342 kb on + strand at 400.360 kb on + strand at 400.371 kb on + strand at 400.372 kb on - strand at 400.372 kb on - strand at 400.418 kb on + strand, within OHPLBJKB_00368 at 400.418 kb on + strand, within OHPLBJKB_00368 at 400.418 kb on + strand, within OHPLBJKB_00368 at 400.419 kb on - strand, within OHPLBJKB_00368 at 400.419 kb on - strand, within OHPLBJKB_00368 at 400.419 kb on - strand, within OHPLBJKB_00368 at 400.485 kb on + strand, within OHPLBJKB_00368 at 400.485 kb on + strand, within OHPLBJKB_00368 at 400.486 kb on - strand, within OHPLBJKB_00368 at 400.644 kb on + strand, within OHPLBJKB_00368 at 400.645 kb on - strand, within OHPLBJKB_00368 at 400.653 kb on + strand, within OHPLBJKB_00368 at 400.653 kb on + strand, within OHPLBJKB_00368 at 400.654 kb on - strand, within OHPLBJKB_00368 at 400.654 kb on - strand, within OHPLBJKB_00368 at 400.654 kb on - strand, within OHPLBJKB_00368 at 400.675 kb on - strand, within OHPLBJKB_00368 at 400.699 kb on - strand, within OHPLBJKB_00368 at 400.756 kb on - strand, within OHPLBJKB_00368
Per-strain Table
Position Strand Gene LocusTag Fraction SP 10E1 remove 398,616 - OHPLBJKB_00365 0.71 -0.5 398,625 + OHPLBJKB_00365 0.71 +0.6 398,626 - OHPLBJKB_00365 0.71 +0.4 398,731 + OHPLBJKB_00365 0.75 -0.7 398,732 - OHPLBJKB_00365 0.75 -1.6 398,751 + OHPLBJKB_00365 0.76 -0.9 398,752 - OHPLBJKB_00365 0.76 -2.1 398,752 - OHPLBJKB_00365 0.76 +1.0 398,752 - OHPLBJKB_00365 0.76 -0.7 398,754 + OHPLBJKB_00365 0.76 +0.1 398,831 + OHPLBJKB_00365 0.79 -0.2 398,831 + OHPLBJKB_00365 0.79 +0.8 398,831 + OHPLBJKB_00365 0.79 +1.1 398,831 + OHPLBJKB_00365 0.79 -0.1 398,832 - OHPLBJKB_00365 0.79 +1.8 398,832 - OHPLBJKB_00365 0.79 +0.4 398,832 - OHPLBJKB_00365 0.79 -2.2 398,844 - OHPLBJKB_00365 0.79 -0.1 398,870 + OHPLBJKB_00365 0.80 -0.8 398,894 + OHPLBJKB_00365 0.81 -0.8 398,894 + OHPLBJKB_00365 0.81 +1.1 398,894 + OHPLBJKB_00365 0.81 +0.3 398,901 - OHPLBJKB_00365 0.82 -1.8 398,908 - OHPLBJKB_00365 0.82 -0.1 399,018 + OHPLBJKB_00365 0.86 -0.6 399,048 - OHPLBJKB_00365 0.87 +0.2 399,071 + OHPLBJKB_00365 0.88 -1.1 399,071 + OHPLBJKB_00365 0.88 -0.6 399,071 + OHPLBJKB_00365 0.88 +2.7 399,071 + OHPLBJKB_00365 0.88 -0.2 399,155 + -0.9 399,155 + -1.2 399,156 - +0.2 399,156 - -0.9 399,210 + +0.1 399,210 + -0.4 399,210 + -2.5 399,210 + -0.7 399,211 - -1.0 399,211 - -0.4 399,211 - -2.6 399,211 - -1.0 399,211 - +0.2 399,211 - -1.3 399,254 + -1.6 399,357 + -0.3 399,358 - -1.1 399,358 - +0.6 399,387 - -2.8 399,389 + -0.6 399,396 + -0.3 399,397 - +1.8 399,464 + -1.3 399,476 + +1.3 399,476 + +0.5 399,477 - -1.4 399,520 + +0.3 399,552 + -2.5 399,553 - -0.1 399,566 + -0.9 399,566 + -0.1 399,570 + +0.8 399,570 + -0.5 399,570 + +0.1 399,571 - +0.7 399,571 - -0.2 399,571 - -1.1 399,571 - +0.2 399,571 - -0.8 399,571 - -1.7 399,571 - -2.8 399,571 - -1.0 399,571 - +0.6 399,571 - +1.4 399,571 - -0.9 399,571 - -0.3 399,571 - +1.2 399,584 + +2.4 399,584 + -1.6 399,584 + +0.8 399,585 - +2.7 399,727 + OHPLBJKB_00366 0.82 -1.4 399,727 + OHPLBJKB_00366 0.82 -1.3 399,727 + OHPLBJKB_00366 0.82 -1.4 399,727 + OHPLBJKB_00366 0.82 -0.1 399,782 + -0.4 399,798 + -0.6 399,847 + -0.8 399,847 + +0.7 399,848 - -0.4 399,855 + -0.9 399,855 + -0.8 399,856 - +0.6 399,860 + -2.8 400,004 + OHPLBJKB_00367 0.36 +0.5 400,006 + OHPLBJKB_00367 0.36 +0.4 400,006 + OHPLBJKB_00367 0.36 +0.7 400,006 + OHPLBJKB_00367 0.36 -1.3 400,007 - OHPLBJKB_00367 0.36 +0.2 400,007 - OHPLBJKB_00367 0.36 -1.1 400,007 - OHPLBJKB_00367 0.36 -0.8 400,044 + OHPLBJKB_00367 0.44 -1.3 400,045 - OHPLBJKB_00367 0.44 +0.5 400,151 + OHPLBJKB_00367 0.67 -1.3 400,173 - OHPLBJKB_00367 0.71 -0.3 400,339 + +0.3 400,342 + -1.5 400,342 + +0.1 400,360 + +0.4 400,371 + -1.0 400,372 - -1.8 400,372 - -0.5 400,418 + OHPLBJKB_00368 0.12 +0.1 400,418 + OHPLBJKB_00368 0.12 +2.7 400,418 + OHPLBJKB_00368 0.12 -0.9 400,419 - OHPLBJKB_00368 0.12 -1.1 400,419 - OHPLBJKB_00368 0.12 -2.3 400,419 - OHPLBJKB_00368 0.12 -0.3 400,485 + OHPLBJKB_00368 0.22 +0.7 400,485 + OHPLBJKB_00368 0.22 -0.8 400,486 - OHPLBJKB_00368 0.22 -0.1 400,644 + OHPLBJKB_00368 0.45 -1.1 400,645 - OHPLBJKB_00368 0.45 -1.2 400,653 + OHPLBJKB_00368 0.46 +0.1 400,653 + OHPLBJKB_00368 0.46 -2.5 400,654 - OHPLBJKB_00368 0.47 +0.1 400,654 - OHPLBJKB_00368 0.47 +0.6 400,654 - OHPLBJKB_00368 0.47 -1.9 400,675 - OHPLBJKB_00368 0.50 -0.3 400,699 - OHPLBJKB_00368 0.53 -0.6 400,756 - OHPLBJKB_00368 0.62 +0.2
Or see this region's nucleotide sequence