Experiment: propionate (C) 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04798 and PFR28_04799 overlap by 20 nucleotides PFR28_04799 and PFR28_04800 are separated by 479 nucleotides
PFR28_04798: PFR28_04798 - putative efflux pump outer membrane protein TtgC, at 5,477,894 to 5,479,369
_04798
PFR28_04799: PFR28_04799 - 6-hydroxy-3-succinoylpyridine 3-monooxygenase HspA, at 5,479,350 to 5,480,039
_04799
PFR28_04800: PFR28_04800 - Multidrug resistance protein MdtA, at 5,480,519 to 5,481,298
_04800
Position (kb) 5479
5480
5481 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5478.458 kb on + strand, within PFR28_04798 at 5478.458 kb on + strand, within PFR28_04798 at 5478.459 kb on - strand, within PFR28_04798 at 5478.459 kb on - strand, within PFR28_04798 at 5478.459 kb on - strand, within PFR28_04798 at 5478.538 kb on + strand, within PFR28_04798 at 5478.538 kb on + strand, within PFR28_04798 at 5478.538 kb on + strand, within PFR28_04798 at 5478.868 kb on + strand, within PFR28_04798 at 5478.869 kb on - strand, within PFR28_04798 at 5478.869 kb on - strand, within PFR28_04798 at 5478.871 kb on + strand, within PFR28_04798 at 5478.871 kb on + strand, within PFR28_04798 at 5478.871 kb on + strand, within PFR28_04798 at 5478.871 kb on + strand, within PFR28_04798 at 5478.871 kb on + strand, within PFR28_04798 at 5478.871 kb on + strand, within PFR28_04798 at 5478.872 kb on - strand, within PFR28_04798 at 5478.872 kb on - strand, within PFR28_04798 at 5478.872 kb on - strand, within PFR28_04798 at 5478.872 kb on - strand, within PFR28_04798 at 5478.872 kb on - strand, within PFR28_04798 at 5478.872 kb on - strand, within PFR28_04798 at 5478.872 kb on - strand, within PFR28_04798 at 5479.097 kb on + strand, within PFR28_04798 at 5479.097 kb on + strand, within PFR28_04798 at 5479.098 kb on - strand, within PFR28_04798 at 5479.098 kb on - strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.181 kb on + strand, within PFR28_04798 at 5479.182 kb on - strand, within PFR28_04798 at 5479.182 kb on - strand, within PFR28_04798 at 5479.182 kb on - strand, within PFR28_04798 at 5479.182 kb on - strand, within PFR28_04798 at 5479.182 kb on - strand, within PFR28_04798 at 5479.182 kb on - strand, within PFR28_04798 at 5479.298 kb on + strand at 5479.298 kb on + strand at 5479.298 kb on + strand at 5479.299 kb on - strand at 5479.299 kb on - strand at 5479.299 kb on - strand at 5479.299 kb on - strand at 5479.299 kb on - strand at 5479.459 kb on + strand, within PFR28_04799 at 5479.459 kb on + strand, within PFR28_04799 at 5479.459 kb on + strand, within PFR28_04799 at 5479.459 kb on + strand, within PFR28_04799 at 5479.459 kb on + strand, within PFR28_04799 at 5479.460 kb on - strand, within PFR28_04799 at 5479.460 kb on - strand, within PFR28_04799 at 5479.460 kb on - strand, within PFR28_04799 at 5479.460 kb on - strand, within PFR28_04799 at 5479.512 kb on + strand, within PFR28_04799 at 5479.513 kb on - strand, within PFR28_04799 at 5479.513 kb on - strand, within PFR28_04799 at 5479.513 kb on - strand, within PFR28_04799 at 5479.556 kb on + strand, within PFR28_04799 at 5479.557 kb on - strand, within PFR28_04799 at 5479.651 kb on + strand, within PFR28_04799 at 5479.651 kb on + strand, within PFR28_04799 at 5479.651 kb on + strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.652 kb on - strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.665 kb on + strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.666 kb on - strand, within PFR28_04799 at 5479.667 kb on + strand, within PFR28_04799 at 5479.667 kb on + strand, within PFR28_04799 at 5479.667 kb on + strand, within PFR28_04799 at 5479.667 kb on + strand, within PFR28_04799 at 5479.668 kb on - strand, within PFR28_04799 at 5479.668 kb on - strand, within PFR28_04799 at 5479.668 kb on - strand, within PFR28_04799 at 5479.668 kb on - strand, within PFR28_04799 at 5479.704 kb on - strand, within PFR28_04799 at 5479.739 kb on + strand, within PFR28_04799 at 5479.740 kb on - strand, within PFR28_04799 at 5479.740 kb on - strand, within PFR28_04799 at 5479.787 kb on - strand, within PFR28_04799 at 5479.812 kb on + strand, within PFR28_04799 at 5479.823 kb on + strand, within PFR28_04799 at 5479.823 kb on + strand, within PFR28_04799 at 5479.823 kb on + strand, within PFR28_04799 at 5479.824 kb on - strand, within PFR28_04799 at 5479.824 kb on - strand, within PFR28_04799 at 5479.824 kb on - strand, within PFR28_04799 at 5479.824 kb on - strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.825 kb on + strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.826 kb on - strand, within PFR28_04799 at 5479.894 kb on + strand, within PFR28_04799 at 5479.894 kb on + strand, within PFR28_04799 at 5479.894 kb on + strand, within PFR28_04799 at 5479.895 kb on - strand, within PFR28_04799 at 5479.895 kb on - strand, within PFR28_04799 at 5479.895 kb on - strand, within PFR28_04799 at 5479.938 kb on + strand, within PFR28_04799 at 5479.938 kb on + strand, within PFR28_04799 at 5479.939 kb on - strand, within PFR28_04799 at 5479.939 kb on - strand, within PFR28_04799 at 5479.939 kb on - strand, within PFR28_04799 at 5479.950 kb on + strand, within PFR28_04799 at 5479.951 kb on - strand, within PFR28_04799 at 5479.951 kb on - strand, within PFR28_04799 at 5479.951 kb on - strand, within PFR28_04799 at 5479.975 kb on + strand at 5479.975 kb on + strand at 5479.975 kb on + strand at 5479.976 kb on - strand at 5479.976 kb on - strand at 5479.999 kb on + strand at 5479.999 kb on + strand at 5480.000 kb on - strand at 5480.011 kb on + strand at 5480.011 kb on + strand at 5480.011 kb on + strand at 5480.011 kb on + strand at 5480.011 kb on + strand at 5480.012 kb on - strand at 5480.012 kb on - strand at 5480.107 kb on + strand at 5480.107 kb on + strand at 5480.107 kb on + strand at 5480.107 kb on + strand at 5480.144 kb on + strand at 5480.145 kb on - strand at 5480.161 kb on + strand at 5480.161 kb on + strand at 5480.161 kb on + strand at 5480.161 kb on + strand at 5480.161 kb on + strand at 5480.162 kb on - strand at 5480.162 kb on - strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.263 kb on + strand at 5480.264 kb on - strand at 5480.264 kb on - strand at 5480.298 kb on + strand at 5480.299 kb on - strand at 5480.299 kb on - strand at 5480.322 kb on + strand at 5480.322 kb on + strand at 5480.323 kb on - strand at 5480.368 kb on + strand at 5480.369 kb on - strand at 5480.389 kb on - strand at 5480.389 kb on - strand at 5480.412 kb on + strand at 5480.413 kb on - strand at 5480.518 kb on + strand at 5480.518 kb on + strand at 5480.534 kb on - strand at 5480.560 kb on - strand at 5480.707 kb on + strand, within PFR28_04800 at 5480.707 kb on + strand, within PFR28_04800 at 5480.708 kb on - strand, within PFR28_04800 at 5480.708 kb on - strand, within PFR28_04800 at 5480.708 kb on - strand, within PFR28_04800 at 5480.783 kb on + strand, within PFR28_04800 at 5480.939 kb on + strand, within PFR28_04800 at 5480.940 kb on - strand, within PFR28_04800 at 5480.940 kb on - strand, within PFR28_04800
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) 20 mM remove 5,478,458 + PFR28_04798 0.38 -0.7 5,478,458 + PFR28_04798 0.38 -2.1 5,478,459 - PFR28_04798 0.38 +0.3 5,478,459 - PFR28_04798 0.38 -0.1 5,478,459 - PFR28_04798 0.38 -0.4 5,478,538 + PFR28_04798 0.44 +1.8 5,478,538 + PFR28_04798 0.44 -0.8 5,478,538 + PFR28_04798 0.44 -0.7 5,478,868 + PFR28_04798 0.66 +0.3 5,478,869 - PFR28_04798 0.66 +0.2 5,478,869 - PFR28_04798 0.66 -0.6 5,478,871 + PFR28_04798 0.66 +0.0 5,478,871 + PFR28_04798 0.66 -0.4 5,478,871 + PFR28_04798 0.66 -0.3 5,478,871 + PFR28_04798 0.66 -1.2 5,478,871 + PFR28_04798 0.66 +0.3 5,478,871 + PFR28_04798 0.66 -1.1 5,478,872 - PFR28_04798 0.66 -0.7 5,478,872 - PFR28_04798 0.66 -0.1 5,478,872 - PFR28_04798 0.66 +0.3 5,478,872 - PFR28_04798 0.66 -0.2 5,478,872 - PFR28_04798 0.66 +0.6 5,478,872 - PFR28_04798 0.66 -0.2 5,478,872 - PFR28_04798 0.66 -0.0 5,479,097 + PFR28_04798 0.82 -0.8 5,479,097 + PFR28_04798 0.82 -0.3 5,479,098 - PFR28_04798 0.82 +0.3 5,479,098 - PFR28_04798 0.82 +0.8 5,479,181 + PFR28_04798 0.87 +0.2 5,479,181 + PFR28_04798 0.87 +0.8 5,479,181 + PFR28_04798 0.87 -0.1 5,479,181 + PFR28_04798 0.87 -0.6 5,479,181 + PFR28_04798 0.87 -0.6 5,479,181 + PFR28_04798 0.87 -0.2 5,479,181 + PFR28_04798 0.87 +0.7 5,479,181 + PFR28_04798 0.87 -1.6 5,479,181 + PFR28_04798 0.87 +2.0 5,479,181 + PFR28_04798 0.87 +1.9 5,479,181 + PFR28_04798 0.87 -0.4 5,479,181 + PFR28_04798 0.87 -0.2 5,479,182 - PFR28_04798 0.87 +0.0 5,479,182 - PFR28_04798 0.87 -0.1 5,479,182 - PFR28_04798 0.87 +0.9 5,479,182 - PFR28_04798 0.87 +1.8 5,479,182 - PFR28_04798 0.87 +0.3 5,479,182 - PFR28_04798 0.87 -0.0 5,479,298 + -0.1 5,479,298 + +0.2 5,479,298 + -0.4 5,479,299 - +0.4 5,479,299 - -1.1 5,479,299 - +0.3 5,479,299 - +0.2 5,479,299 - -0.2 5,479,459 + PFR28_04799 0.16 +0.6 5,479,459 + PFR28_04799 0.16 +1.0 5,479,459 + PFR28_04799 0.16 +0.2 5,479,459 + PFR28_04799 0.16 +0.0 5,479,459 + PFR28_04799 0.16 -0.3 5,479,460 - PFR28_04799 0.16 +0.4 5,479,460 - PFR28_04799 0.16 -0.9 5,479,460 - PFR28_04799 0.16 -0.8 5,479,460 - PFR28_04799 0.16 +1.4 5,479,512 + PFR28_04799 0.23 +0.1 5,479,513 - PFR28_04799 0.24 +0.1 5,479,513 - PFR28_04799 0.24 +0.1 5,479,513 - PFR28_04799 0.24 +0.1 5,479,556 + PFR28_04799 0.30 -0.5 5,479,557 - PFR28_04799 0.30 +0.6 5,479,651 + PFR28_04799 0.44 -2.4 5,479,651 + PFR28_04799 0.44 -0.2 5,479,651 + PFR28_04799 0.44 -0.2 5,479,652 - PFR28_04799 0.44 +0.2 5,479,652 - PFR28_04799 0.44 -0.8 5,479,652 - PFR28_04799 0.44 -0.0 5,479,652 - PFR28_04799 0.44 -0.5 5,479,652 - PFR28_04799 0.44 -0.3 5,479,652 - PFR28_04799 0.44 +0.6 5,479,652 - PFR28_04799 0.44 +0.0 5,479,652 - PFR28_04799 0.44 -0.8 5,479,665 + PFR28_04799 0.46 -0.7 5,479,665 + PFR28_04799 0.46 -0.7 5,479,665 + PFR28_04799 0.46 +1.1 5,479,665 + PFR28_04799 0.46 -0.4 5,479,665 + PFR28_04799 0.46 -0.4 5,479,665 + PFR28_04799 0.46 +0.4 5,479,665 + PFR28_04799 0.46 -0.0 5,479,665 + PFR28_04799 0.46 -0.8 5,479,665 + PFR28_04799 0.46 -0.3 5,479,666 - PFR28_04799 0.46 -1.5 5,479,666 - PFR28_04799 0.46 -0.3 5,479,666 - PFR28_04799 0.46 +0.1 5,479,666 - PFR28_04799 0.46 +0.4 5,479,666 - PFR28_04799 0.46 -0.4 5,479,666 - PFR28_04799 0.46 -0.4 5,479,667 + PFR28_04799 0.46 +0.3 5,479,667 + PFR28_04799 0.46 +0.2 5,479,667 + PFR28_04799 0.46 +0.2 5,479,667 + PFR28_04799 0.46 -0.2 5,479,668 - PFR28_04799 0.46 -1.0 5,479,668 - PFR28_04799 0.46 -0.1 5,479,668 - PFR28_04799 0.46 -0.2 5,479,668 - PFR28_04799 0.46 -0.4 5,479,704 - PFR28_04799 0.51 -0.4 5,479,739 + PFR28_04799 0.56 +0.7 5,479,740 - PFR28_04799 0.57 -0.6 5,479,740 - PFR28_04799 0.57 -0.2 5,479,787 - PFR28_04799 0.63 +0.4 5,479,812 + PFR28_04799 0.67 +0.3 5,479,823 + PFR28_04799 0.69 +0.4 5,479,823 + PFR28_04799 0.69 -0.5 5,479,823 + PFR28_04799 0.69 +0.6 5,479,824 - PFR28_04799 0.69 -0.5 5,479,824 - PFR28_04799 0.69 -0.4 5,479,824 - PFR28_04799 0.69 -0.0 5,479,824 - PFR28_04799 0.69 +0.2 5,479,825 + PFR28_04799 0.69 +0.7 5,479,825 + PFR28_04799 0.69 +1.2 5,479,825 + PFR28_04799 0.69 +0.6 5,479,825 + PFR28_04799 0.69 +0.5 5,479,825 + PFR28_04799 0.69 +0.5 5,479,825 + PFR28_04799 0.69 +0.0 5,479,825 + PFR28_04799 0.69 -0.7 5,479,826 - PFR28_04799 0.69 +0.2 5,479,826 - PFR28_04799 0.69 -0.6 5,479,826 - PFR28_04799 0.69 -0.7 5,479,826 - PFR28_04799 0.69 -0.8 5,479,826 - PFR28_04799 0.69 +0.2 5,479,826 - PFR28_04799 0.69 -0.3 5,479,826 - PFR28_04799 0.69 -0.9 5,479,826 - PFR28_04799 0.69 +0.7 5,479,826 - PFR28_04799 0.69 +0.5 5,479,826 - PFR28_04799 0.69 +1.1 5,479,894 + PFR28_04799 0.79 -1.6 5,479,894 + PFR28_04799 0.79 +0.1 5,479,894 + PFR28_04799 0.79 +0.0 5,479,895 - PFR28_04799 0.79 +0.6 5,479,895 - PFR28_04799 0.79 -1.4 5,479,895 - PFR28_04799 0.79 +0.0 5,479,938 + PFR28_04799 0.85 -0.6 5,479,938 + PFR28_04799 0.85 -0.6 5,479,939 - PFR28_04799 0.85 -0.1 5,479,939 - PFR28_04799 0.85 +0.1 5,479,939 - PFR28_04799 0.85 -0.6 5,479,950 + PFR28_04799 0.87 -2.3 5,479,951 - PFR28_04799 0.87 -0.3 5,479,951 - PFR28_04799 0.87 -2.4 5,479,951 - PFR28_04799 0.87 -0.6 5,479,975 + +0.1 5,479,975 + -0.8 5,479,975 + -1.4 5,479,976 - -0.6 5,479,976 - -0.2 5,479,999 + -1.0 5,479,999 + -0.9 5,480,000 - +1.0 5,480,011 + +0.9 5,480,011 + +0.2 5,480,011 + +0.5 5,480,011 + -0.8 5,480,011 + +0.6 5,480,012 - +0.1 5,480,012 - +0.1 5,480,107 + -0.5 5,480,107 + -0.2 5,480,107 + -0.4 5,480,107 + +0.7 5,480,144 + -1.5 5,480,145 - +0.1 5,480,161 + +0.3 5,480,161 + -0.2 5,480,161 + -0.1 5,480,161 + +0.4 5,480,161 + -0.4 5,480,162 - -0.3 5,480,162 - +0.1 5,480,263 + +0.1 5,480,263 + -0.7 5,480,263 + -1.1 5,480,263 + -0.9 5,480,263 + +0.1 5,480,263 + -0.6 5,480,263 + -0.6 5,480,264 - +0.2 5,480,264 - -0.2 5,480,298 + -0.6 5,480,299 - -0.2 5,480,299 - -0.3 5,480,322 + -2.1 5,480,322 + +0.8 5,480,323 - +0.5 5,480,368 + +0.7 5,480,369 - -0.1 5,480,389 - -0.1 5,480,389 - +0.5 5,480,412 + -0.4 5,480,413 - -0.2 5,480,518 + -1.0 5,480,518 + -0.0 5,480,534 - +0.5 5,480,560 - +0.5 5,480,707 + PFR28_04800 0.24 +1.4 5,480,707 + PFR28_04800 0.24 +1.1 5,480,708 - PFR28_04800 0.24 +0.3 5,480,708 - PFR28_04800 0.24 +0.4 5,480,708 - PFR28_04800 0.24 +0.1 5,480,783 + PFR28_04800 0.34 +0.2 5,480,939 + PFR28_04800 0.54 -0.2 5,480,940 - PFR28_04800 0.54 +0.3 5,480,940 - PFR28_04800 0.54 -0.0
Or see this region's nucleotide sequence