Experiment: SP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_03217 and OHPLBJKB_03218 are separated by 41 nucleotides OHPLBJKB_03218 and OHPLBJKB_03219 are separated by 399 nucleotides OHPLBJKB_03219 and OHPLBJKB_03220 are separated by 30 nucleotides
OHPLBJKB_03217: OHPLBJKB_03217 - putative cyclic di-GMP phosphodiesterase PdeB, at 3,357,956 to 3,359,506
_03217
OHPLBJKB_03218: OHPLBJKB_03218 - putative protein YbaA, at 3,359,548 to 3,359,880
_03218
OHPLBJKB_03219: OHPLBJKB_03219 - DNA base-flipping protein, at 3,360,280 to 3,360,591
_03219
OHPLBJKB_03220: OHPLBJKB_03220 - putative lipoprotein YbaY, at 3,360,622 to 3,361,194
_03220
Position (kb)
3359
3360 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3358.582 kb on + strand, within OHPLBJKB_03217 at 3358.595 kb on + strand, within OHPLBJKB_03217 at 3358.624 kb on + strand, within OHPLBJKB_03217 at 3358.625 kb on - strand, within OHPLBJKB_03217 at 3358.687 kb on + strand, within OHPLBJKB_03217 at 3358.687 kb on + strand, within OHPLBJKB_03217 at 3358.745 kb on - strand, within OHPLBJKB_03217 at 3358.745 kb on - strand, within OHPLBJKB_03217 at 3358.805 kb on - strand, within OHPLBJKB_03217 at 3358.818 kb on - strand, within OHPLBJKB_03217 at 3358.837 kb on - strand, within OHPLBJKB_03217 at 3358.894 kb on + strand, within OHPLBJKB_03217 at 3358.894 kb on + strand, within OHPLBJKB_03217 at 3358.895 kb on - strand, within OHPLBJKB_03217 at 3358.895 kb on - strand, within OHPLBJKB_03217 at 3358.918 kb on + strand, within OHPLBJKB_03217 at 3358.970 kb on - strand, within OHPLBJKB_03217 at 3358.971 kb on + strand, within OHPLBJKB_03217 at 3358.972 kb on - strand, within OHPLBJKB_03217 at 3358.972 kb on - strand, within OHPLBJKB_03217 at 3358.990 kb on + strand, within OHPLBJKB_03217 at 3359.026 kb on + strand, within OHPLBJKB_03217 at 3359.027 kb on - strand, within OHPLBJKB_03217 at 3359.027 kb on - strand, within OHPLBJKB_03217 at 3359.027 kb on - strand, within OHPLBJKB_03217 at 3359.179 kb on - strand, within OHPLBJKB_03217 at 3359.252 kb on + strand, within OHPLBJKB_03217 at 3359.252 kb on + strand, within OHPLBJKB_03217 at 3359.253 kb on - strand, within OHPLBJKB_03217 at 3359.256 kb on + strand, within OHPLBJKB_03217 at 3359.256 kb on + strand, within OHPLBJKB_03217 at 3359.256 kb on + strand, within OHPLBJKB_03217 at 3359.315 kb on + strand, within OHPLBJKB_03217 at 3359.315 kb on + strand, within OHPLBJKB_03217 at 3359.316 kb on - strand, within OHPLBJKB_03217 at 3359.316 kb on - strand, within OHPLBJKB_03217 at 3359.317 kb on + strand, within OHPLBJKB_03217 at 3359.395 kb on + strand at 3359.450 kb on + strand at 3359.549 kb on + strand at 3359.550 kb on - strand at 3359.579 kb on + strand at 3359.579 kb on + strand at 3359.579 kb on + strand at 3359.579 kb on + strand at 3359.579 kb on + strand at 3359.580 kb on - strand at 3359.764 kb on + strand, within OHPLBJKB_03218 at 3359.790 kb on + strand, within OHPLBJKB_03218 at 3359.894 kb on + strand at 3359.894 kb on + strand at 3359.894 kb on + strand at 3359.894 kb on + strand at 3359.895 kb on - strand at 3359.895 kb on - strand at 3359.895 kb on - strand at 3359.908 kb on + strand at 3359.908 kb on + strand at 3359.908 kb on + strand at 3359.908 kb on + strand at 3359.909 kb on - strand at 3360.250 kb on + strand at 3360.251 kb on - strand at 3360.343 kb on + strand, within OHPLBJKB_03219 at 3360.343 kb on + strand, within OHPLBJKB_03219 at 3360.343 kb on + strand, within OHPLBJKB_03219 at 3360.343 kb on + strand, within OHPLBJKB_03219 at 3360.344 kb on - strand, within OHPLBJKB_03219 at 3360.344 kb on - strand, within OHPLBJKB_03219 at 3360.355 kb on + strand, within OHPLBJKB_03219 at 3360.586 kb on + strand at 3360.586 kb on + strand at 3360.590 kb on - strand at 3360.623 kb on + strand at 3360.626 kb on + strand at 3360.626 kb on + strand at 3360.634 kb on - strand at 3360.685 kb on + strand, within OHPLBJKB_03220 at 3360.686 kb on - strand, within OHPLBJKB_03220 at 3360.763 kb on - strand, within OHPLBJKB_03220 at 3360.804 kb on + strand, within OHPLBJKB_03220 at 3360.804 kb on + strand, within OHPLBJKB_03220 at 3360.805 kb on - strand, within OHPLBJKB_03220 at 3360.805 kb on - strand, within OHPLBJKB_03220 at 3360.808 kb on + strand, within OHPLBJKB_03220 at 3360.809 kb on - strand, within OHPLBJKB_03220 at 3360.879 kb on + strand, within OHPLBJKB_03220 at 3360.879 kb on + strand, within OHPLBJKB_03220
Per-strain Table
Position Strand Gene LocusTag Fraction SP remove 3,358,582 + OHPLBJKB_03217 0.40 +0.1 3,358,595 + OHPLBJKB_03217 0.41 +0.6 3,358,624 + OHPLBJKB_03217 0.43 +1.3 3,358,625 - OHPLBJKB_03217 0.43 -0.1 3,358,687 + OHPLBJKB_03217 0.47 +2.7 3,358,687 + OHPLBJKB_03217 0.47 +1.3 3,358,745 - OHPLBJKB_03217 0.51 +2.2 3,358,745 - OHPLBJKB_03217 0.51 -0.5 3,358,805 - OHPLBJKB_03217 0.55 -0.1 3,358,818 - OHPLBJKB_03217 0.56 +1.5 3,358,837 - OHPLBJKB_03217 0.57 -0.4 3,358,894 + OHPLBJKB_03217 0.60 +1.3 3,358,894 + OHPLBJKB_03217 0.60 -0.6 3,358,895 - OHPLBJKB_03217 0.61 +1.7 3,358,895 - OHPLBJKB_03217 0.61 +0.4 3,358,918 + OHPLBJKB_03217 0.62 -0.1 3,358,970 - OHPLBJKB_03217 0.65 +0.0 3,358,971 + OHPLBJKB_03217 0.65 -1.9 3,358,972 - OHPLBJKB_03217 0.66 -0.8 3,358,972 - OHPLBJKB_03217 0.66 -0.9 3,358,990 + OHPLBJKB_03217 0.67 +1.5 3,359,026 + OHPLBJKB_03217 0.69 -2.3 3,359,027 - OHPLBJKB_03217 0.69 -1.1 3,359,027 - OHPLBJKB_03217 0.69 -0.1 3,359,027 - OHPLBJKB_03217 0.69 -0.9 3,359,179 - OHPLBJKB_03217 0.79 +0.5 3,359,252 + OHPLBJKB_03217 0.84 -1.0 3,359,252 + OHPLBJKB_03217 0.84 -0.2 3,359,253 - OHPLBJKB_03217 0.84 -0.0 3,359,256 + OHPLBJKB_03217 0.84 -1.5 3,359,256 + OHPLBJKB_03217 0.84 +1.6 3,359,256 + OHPLBJKB_03217 0.84 -0.3 3,359,315 + OHPLBJKB_03217 0.88 +0.3 3,359,315 + OHPLBJKB_03217 0.88 -1.0 3,359,316 - OHPLBJKB_03217 0.88 +0.5 3,359,316 - OHPLBJKB_03217 0.88 +1.1 3,359,317 + OHPLBJKB_03217 0.88 +0.3 3,359,395 + +0.1 3,359,450 + +0.7 3,359,549 + -3.4 3,359,550 - -0.6 3,359,579 + -1.3 3,359,579 + -1.7 3,359,579 + +0.4 3,359,579 + -1.1 3,359,579 + -2.2 3,359,580 - -0.8 3,359,764 + OHPLBJKB_03218 0.65 +1.4 3,359,790 + OHPLBJKB_03218 0.73 +2.3 3,359,894 + +0.1 3,359,894 + -1.0 3,359,894 + -0.7 3,359,894 + +0.1 3,359,895 - +0.6 3,359,895 - +0.6 3,359,895 - -1.4 3,359,908 + -1.4 3,359,908 + -1.1 3,359,908 + +0.5 3,359,908 + +1.3 3,359,909 - -0.7 3,360,250 + +1.1 3,360,251 - +1.0 3,360,343 + OHPLBJKB_03219 0.20 -1.2 3,360,343 + OHPLBJKB_03219 0.20 -0.5 3,360,343 + OHPLBJKB_03219 0.20 -0.8 3,360,343 + OHPLBJKB_03219 0.20 -2.2 3,360,344 - OHPLBJKB_03219 0.21 -0.3 3,360,344 - OHPLBJKB_03219 0.21 -0.8 3,360,355 + OHPLBJKB_03219 0.24 -0.7 3,360,586 + -0.5 3,360,586 + +0.6 3,360,590 - +0.1 3,360,623 + +1.8 3,360,626 + +0.6 3,360,626 + -1.5 3,360,634 - +0.5 3,360,685 + OHPLBJKB_03220 0.11 +0.4 3,360,686 - OHPLBJKB_03220 0.11 -0.6 3,360,763 - OHPLBJKB_03220 0.25 +1.0 3,360,804 + OHPLBJKB_03220 0.32 -0.2 3,360,804 + OHPLBJKB_03220 0.32 -0.4 3,360,805 - OHPLBJKB_03220 0.32 +0.5 3,360,805 - OHPLBJKB_03220 0.32 -1.7 3,360,808 + OHPLBJKB_03220 0.32 -0.7 3,360,809 - OHPLBJKB_03220 0.33 +0.4 3,360,879 + OHPLBJKB_03220 0.45 -0.2 3,360,879 + OHPLBJKB_03220 0.45 +0.0
Or see this region's nucleotide sequence