Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02417

Experiment: FrBurgundy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02416 and OHPLBJKB_02417 are separated by 27 nucleotidesOHPLBJKB_02417 and OHPLBJKB_02418 overlap by 4 nucleotides OHPLBJKB_02416: OHPLBJKB_02416 - hypothetical protein, at 2,528,946 to 2,530,841 _02416 OHPLBJKB_02417: OHPLBJKB_02417 - putative protein YciO, at 2,530,869 to 2,531,489 _02417 OHPLBJKB_02418: OHPLBJKB_02418 - '5'-3' exoribonuclease' transl_table=11, at 2,531,486 to 2,532,367 _02418 Position (kb) 2530 2531 2532Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 2529.913 kb on - strand, within OHPLBJKB_02416at 2529.966 kb on + strand, within OHPLBJKB_02416at 2529.982 kb on + strand, within OHPLBJKB_02416at 2530.051 kb on + strand, within OHPLBJKB_02416at 2530.051 kb on + strand, within OHPLBJKB_02416at 2530.051 kb on + strand, within OHPLBJKB_02416at 2530.053 kb on + strand, within OHPLBJKB_02416at 2530.054 kb on - strand, within OHPLBJKB_02416at 2530.054 kb on - strand, within OHPLBJKB_02416at 2530.054 kb on - strand, within OHPLBJKB_02416at 2530.075 kb on - strand, within OHPLBJKB_02416at 2530.093 kb on - strand, within OHPLBJKB_02416at 2530.113 kb on + strand, within OHPLBJKB_02416at 2530.191 kb on + strand, within OHPLBJKB_02416at 2530.353 kb on - strand, within OHPLBJKB_02416at 2530.354 kb on + strand, within OHPLBJKB_02416at 2530.354 kb on + strand, within OHPLBJKB_02416at 2530.355 kb on - strand, within OHPLBJKB_02416at 2530.459 kb on + strand, within OHPLBJKB_02416at 2530.502 kb on + strand, within OHPLBJKB_02416at 2530.571 kb on + strand, within OHPLBJKB_02416at 2530.571 kb on + strand, within OHPLBJKB_02416at 2530.572 kb on - strand, within OHPLBJKB_02416at 2530.572 kb on - strand, within OHPLBJKB_02416at 2530.572 kb on - strand, within OHPLBJKB_02416at 2530.576 kb on + strand, within OHPLBJKB_02416at 2530.577 kb on - strand, within OHPLBJKB_02416at 2530.577 kb on - strand, within OHPLBJKB_02416at 2530.623 kb on + strand, within OHPLBJKB_02416at 2530.634 kb on - strand, within OHPLBJKB_02416at 2530.646 kb on + strand, within OHPLBJKB_02416at 2530.750 kb on + strandat 2530.807 kb on - strandat 2530.871 kb on - strandat 2530.872 kb on + strandat 2530.873 kb on - strandat 2530.873 kb on - strandat 2530.873 kb on - strandat 2530.873 kb on - strandat 2530.873 kb on - strandat 2530.893 kb on + strandat 2530.894 kb on - strandat 2530.894 kb on - strandat 2530.920 kb on - strandat 2530.937 kb on + strand, within OHPLBJKB_02417at 2530.987 kb on - strand, within OHPLBJKB_02417at 2531.130 kb on - strand, within OHPLBJKB_02417at 2531.199 kb on - strand, within OHPLBJKB_02417at 2531.199 kb on - strand, within OHPLBJKB_02417at 2531.199 kb on - strand, within OHPLBJKB_02417at 2531.199 kb on - strand, within OHPLBJKB_02417at 2531.199 kb on - strand, within OHPLBJKB_02417at 2531.200 kb on + strand, within OHPLBJKB_02417at 2531.200 kb on + strand, within OHPLBJKB_02417at 2531.200 kb on + strand, within OHPLBJKB_02417at 2531.200 kb on + strand, within OHPLBJKB_02417at 2531.200 kb on + strand, within OHPLBJKB_02417at 2531.201 kb on - strand, within OHPLBJKB_02417at 2531.201 kb on - strand, within OHPLBJKB_02417at 2531.201 kb on - strand, within OHPLBJKB_02417at 2531.201 kb on - strand, within OHPLBJKB_02417at 2531.201 kb on - strand, within OHPLBJKB_02417at 2531.258 kb on - strand, within OHPLBJKB_02417at 2531.325 kb on - strand, within OHPLBJKB_02417at 2531.333 kb on + strand, within OHPLBJKB_02417at 2531.333 kb on + strand, within OHPLBJKB_02417at 2531.334 kb on - strand, within OHPLBJKB_02417at 2531.364 kb on - strand, within OHPLBJKB_02417at 2531.414 kb on + strand, within OHPLBJKB_02417at 2531.474 kb on - strandat 2531.474 kb on - strandat 2531.489 kb on + strandat 2531.489 kb on + strandat 2531.490 kb on - strandat 2531.624 kb on + strand, within OHPLBJKB_02418at 2531.625 kb on - strand, within OHPLBJKB_02418at 2531.659 kb on + strand, within OHPLBJKB_02418at 2531.750 kb on - strand, within OHPLBJKB_02418at 2531.755 kb on + strand, within OHPLBJKB_02418at 2531.780 kb on + strand, within OHPLBJKB_02418at 2531.780 kb on + strand, within OHPLBJKB_02418at 2531.780 kb on + strand, within OHPLBJKB_02418at 2531.781 kb on - strand, within OHPLBJKB_02418at 2531.828 kb on + strand, within OHPLBJKB_02418at 2531.828 kb on + strand, within OHPLBJKB_02418at 2531.828 kb on + strand, within OHPLBJKB_02418at 2531.828 kb on + strand, within OHPLBJKB_02418at 2531.833 kb on + strand, within OHPLBJKB_02418at 2531.999 kb on + strand, within OHPLBJKB_02418at 2531.999 kb on + strand, within OHPLBJKB_02418at 2532.095 kb on - strand, within OHPLBJKB_02418at 2532.097 kb on + strand, within OHPLBJKB_02418at 2532.098 kb on - strand, within OHPLBJKB_02418at 2532.118 kb on + strand, within OHPLBJKB_02418at 2532.167 kb on - strand, within OHPLBJKB_02418at 2532.339 kb on + strandat 2532.351 kb on + strandat 2532.352 kb on - strandat 2532.427 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FrBurgundy
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2,529,913 - OHPLBJKB_02416 0.51 +1.9
2,529,966 + OHPLBJKB_02416 0.54 -1.8
2,529,982 + OHPLBJKB_02416 0.55 +0.6
2,530,051 + OHPLBJKB_02416 0.58 +0.5
2,530,051 + OHPLBJKB_02416 0.58 -0.6
2,530,051 + OHPLBJKB_02416 0.58 +1.5
2,530,053 + OHPLBJKB_02416 0.58 -0.2
2,530,054 - OHPLBJKB_02416 0.58 +1.6
2,530,054 - OHPLBJKB_02416 0.58 -0.8
2,530,054 - OHPLBJKB_02416 0.58 +0.2
2,530,075 - OHPLBJKB_02416 0.60 -0.3
2,530,093 - OHPLBJKB_02416 0.60 +0.2
2,530,113 + OHPLBJKB_02416 0.62 -1.1
2,530,191 + OHPLBJKB_02416 0.66 -1.2
2,530,353 - OHPLBJKB_02416 0.74 +0.1
2,530,354 + OHPLBJKB_02416 0.74 +0.5
2,530,354 + OHPLBJKB_02416 0.74 -1.8
2,530,355 - OHPLBJKB_02416 0.74 +0.8
2,530,459 + OHPLBJKB_02416 0.80 +0.1
2,530,502 + OHPLBJKB_02416 0.82 +0.5
2,530,571 + OHPLBJKB_02416 0.86 -1.9
2,530,571 + OHPLBJKB_02416 0.86 -1.5
2,530,572 - OHPLBJKB_02416 0.86 +0.8
2,530,572 - OHPLBJKB_02416 0.86 +1.2
2,530,572 - OHPLBJKB_02416 0.86 -0.3
2,530,576 + OHPLBJKB_02416 0.86 -1.2
2,530,577 - OHPLBJKB_02416 0.86 +0.8
2,530,577 - OHPLBJKB_02416 0.86 -2.4
2,530,623 + OHPLBJKB_02416 0.88 -1.3
2,530,634 - OHPLBJKB_02416 0.89 +0.4
2,530,646 + OHPLBJKB_02416 0.90 -0.4
2,530,750 + +1.2
2,530,807 - -1.5
2,530,871 - +1.4
2,530,872 + -1.3
2,530,873 - +4.3
2,530,873 - +0.7
2,530,873 - +2.0
2,530,873 - -1.5
2,530,873 - +0.3
2,530,893 + -1.1
2,530,894 - -2.1
2,530,894 - +7.0
2,530,920 - -0.5
2,530,937 + OHPLBJKB_02417 0.11 +1.2
2,530,987 - OHPLBJKB_02417 0.19 -0.4
2,531,130 - OHPLBJKB_02417 0.42 -0.2
2,531,199 - OHPLBJKB_02417 0.53 +1.4
2,531,199 - OHPLBJKB_02417 0.53 +2.1
2,531,199 - OHPLBJKB_02417 0.53 +0.5
2,531,199 - OHPLBJKB_02417 0.53 +1.1
2,531,199 - OHPLBJKB_02417 0.53 -0.2
2,531,200 + OHPLBJKB_02417 0.53 +0.5
2,531,200 + OHPLBJKB_02417 0.53 +0.7
2,531,200 + OHPLBJKB_02417 0.53 -1.3
2,531,200 + OHPLBJKB_02417 0.53 -0.2
2,531,200 + OHPLBJKB_02417 0.53 +1.8
2,531,201 - OHPLBJKB_02417 0.53 +1.2
2,531,201 - OHPLBJKB_02417 0.53 -0.6
2,531,201 - OHPLBJKB_02417 0.53 +1.4
2,531,201 - OHPLBJKB_02417 0.53 +0.3
2,531,201 - OHPLBJKB_02417 0.53 -0.8
2,531,258 - OHPLBJKB_02417 0.63 +0.1
2,531,325 - OHPLBJKB_02417 0.73 -0.4
2,531,333 + OHPLBJKB_02417 0.75 +0.1
2,531,333 + OHPLBJKB_02417 0.75 +0.8
2,531,334 - OHPLBJKB_02417 0.75 +0.9
2,531,364 - OHPLBJKB_02417 0.80 +1.3
2,531,414 + OHPLBJKB_02417 0.88 -1.7
2,531,474 - -0.3
2,531,474 - -0.4
2,531,489 + +3.1
2,531,489 + -1.2
2,531,490 - -0.7
2,531,624 + OHPLBJKB_02418 0.16 -0.3
2,531,625 - OHPLBJKB_02418 0.16 -2.1
2,531,659 + OHPLBJKB_02418 0.20 +2.4
2,531,750 - OHPLBJKB_02418 0.30 +0.2
2,531,755 + OHPLBJKB_02418 0.30 +1.2
2,531,780 + OHPLBJKB_02418 0.33 +0.9
2,531,780 + OHPLBJKB_02418 0.33 -2.1
2,531,780 + OHPLBJKB_02418 0.33 +1.0
2,531,781 - OHPLBJKB_02418 0.33 -2.0
2,531,828 + OHPLBJKB_02418 0.39 -1.9
2,531,828 + OHPLBJKB_02418 0.39 -0.5
2,531,828 + OHPLBJKB_02418 0.39 -1.7
2,531,828 + OHPLBJKB_02418 0.39 -1.0
2,531,833 + OHPLBJKB_02418 0.39 +1.7
2,531,999 + OHPLBJKB_02418 0.58 -0.9
2,531,999 + OHPLBJKB_02418 0.58 +0.8
2,532,095 - OHPLBJKB_02418 0.69 -2.5
2,532,097 + OHPLBJKB_02418 0.69 -1.4
2,532,098 - OHPLBJKB_02418 0.69 -0.9
2,532,118 + OHPLBJKB_02418 0.72 +0.9
2,532,167 - OHPLBJKB_02418 0.77 +0.6
2,532,339 + +2.4
2,532,351 + +0.6
2,532,352 - -2.2
2,532,427 - -0.3

Or see this region's nucleotide sequence