Experiment: FrBurgundy
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02416 and OHPLBJKB_02417 are separated by 27 nucleotides OHPLBJKB_02417 and OHPLBJKB_02418 overlap by 4 nucleotides
OHPLBJKB_02416: OHPLBJKB_02416 - hypothetical protein, at 2,528,946 to 2,530,841
_02416
OHPLBJKB_02417: OHPLBJKB_02417 - putative protein YciO, at 2,530,869 to 2,531,489
_02417
OHPLBJKB_02418: OHPLBJKB_02418 - '5'-3' exoribonuclease' transl_table=11, at 2,531,486 to 2,532,367
_02418
Position (kb)
2530
2531
2532 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 2529.913 kb on - strand, within OHPLBJKB_02416 at 2529.966 kb on + strand, within OHPLBJKB_02416 at 2529.982 kb on + strand, within OHPLBJKB_02416 at 2530.051 kb on + strand, within OHPLBJKB_02416 at 2530.051 kb on + strand, within OHPLBJKB_02416 at 2530.051 kb on + strand, within OHPLBJKB_02416 at 2530.053 kb on + strand, within OHPLBJKB_02416 at 2530.054 kb on - strand, within OHPLBJKB_02416 at 2530.054 kb on - strand, within OHPLBJKB_02416 at 2530.054 kb on - strand, within OHPLBJKB_02416 at 2530.075 kb on - strand, within OHPLBJKB_02416 at 2530.093 kb on - strand, within OHPLBJKB_02416 at 2530.113 kb on + strand, within OHPLBJKB_02416 at 2530.191 kb on + strand, within OHPLBJKB_02416 at 2530.353 kb on - strand, within OHPLBJKB_02416 at 2530.354 kb on + strand, within OHPLBJKB_02416 at 2530.354 kb on + strand, within OHPLBJKB_02416 at 2530.355 kb on - strand, within OHPLBJKB_02416 at 2530.459 kb on + strand, within OHPLBJKB_02416 at 2530.502 kb on + strand, within OHPLBJKB_02416 at 2530.571 kb on + strand, within OHPLBJKB_02416 at 2530.571 kb on + strand, within OHPLBJKB_02416 at 2530.572 kb on - strand, within OHPLBJKB_02416 at 2530.572 kb on - strand, within OHPLBJKB_02416 at 2530.572 kb on - strand, within OHPLBJKB_02416 at 2530.576 kb on + strand, within OHPLBJKB_02416 at 2530.577 kb on - strand, within OHPLBJKB_02416 at 2530.577 kb on - strand, within OHPLBJKB_02416 at 2530.623 kb on + strand, within OHPLBJKB_02416 at 2530.634 kb on - strand, within OHPLBJKB_02416 at 2530.646 kb on + strand, within OHPLBJKB_02416 at 2530.750 kb on + strand at 2530.807 kb on - strand at 2530.871 kb on - strand at 2530.872 kb on + strand at 2530.873 kb on - strand at 2530.873 kb on - strand at 2530.873 kb on - strand at 2530.873 kb on - strand at 2530.873 kb on - strand at 2530.893 kb on + strand at 2530.894 kb on - strand at 2530.894 kb on - strand at 2530.920 kb on - strand at 2530.937 kb on + strand, within OHPLBJKB_02417 at 2530.987 kb on - strand, within OHPLBJKB_02417 at 2531.130 kb on - strand, within OHPLBJKB_02417 at 2531.199 kb on - strand, within OHPLBJKB_02417 at 2531.199 kb on - strand, within OHPLBJKB_02417 at 2531.199 kb on - strand, within OHPLBJKB_02417 at 2531.199 kb on - strand, within OHPLBJKB_02417 at 2531.199 kb on - strand, within OHPLBJKB_02417 at 2531.200 kb on + strand, within OHPLBJKB_02417 at 2531.200 kb on + strand, within OHPLBJKB_02417 at 2531.200 kb on + strand, within OHPLBJKB_02417 at 2531.200 kb on + strand, within OHPLBJKB_02417 at 2531.200 kb on + strand, within OHPLBJKB_02417 at 2531.201 kb on - strand, within OHPLBJKB_02417 at 2531.201 kb on - strand, within OHPLBJKB_02417 at 2531.201 kb on - strand, within OHPLBJKB_02417 at 2531.201 kb on - strand, within OHPLBJKB_02417 at 2531.201 kb on - strand, within OHPLBJKB_02417 at 2531.258 kb on - strand, within OHPLBJKB_02417 at 2531.325 kb on - strand, within OHPLBJKB_02417 at 2531.333 kb on + strand, within OHPLBJKB_02417 at 2531.333 kb on + strand, within OHPLBJKB_02417 at 2531.334 kb on - strand, within OHPLBJKB_02417 at 2531.364 kb on - strand, within OHPLBJKB_02417 at 2531.414 kb on + strand, within OHPLBJKB_02417 at 2531.474 kb on - strand at 2531.474 kb on - strand at 2531.489 kb on + strand at 2531.489 kb on + strand at 2531.490 kb on - strand at 2531.624 kb on + strand, within OHPLBJKB_02418 at 2531.625 kb on - strand, within OHPLBJKB_02418 at 2531.659 kb on + strand, within OHPLBJKB_02418 at 2531.750 kb on - strand, within OHPLBJKB_02418 at 2531.755 kb on + strand, within OHPLBJKB_02418 at 2531.780 kb on + strand, within OHPLBJKB_02418 at 2531.780 kb on + strand, within OHPLBJKB_02418 at 2531.780 kb on + strand, within OHPLBJKB_02418 at 2531.781 kb on - strand, within OHPLBJKB_02418 at 2531.828 kb on + strand, within OHPLBJKB_02418 at 2531.828 kb on + strand, within OHPLBJKB_02418 at 2531.828 kb on + strand, within OHPLBJKB_02418 at 2531.828 kb on + strand, within OHPLBJKB_02418 at 2531.833 kb on + strand, within OHPLBJKB_02418 at 2531.999 kb on + strand, within OHPLBJKB_02418 at 2531.999 kb on + strand, within OHPLBJKB_02418 at 2532.095 kb on - strand, within OHPLBJKB_02418 at 2532.097 kb on + strand, within OHPLBJKB_02418 at 2532.098 kb on - strand, within OHPLBJKB_02418 at 2532.118 kb on + strand, within OHPLBJKB_02418 at 2532.167 kb on - strand, within OHPLBJKB_02418 at 2532.339 kb on + strand at 2532.351 kb on + strand at 2532.352 kb on - strand at 2532.427 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction FrBurgundy remove 2,529,913 - OHPLBJKB_02416 0.51 +1.9 2,529,966 + OHPLBJKB_02416 0.54 -1.8 2,529,982 + OHPLBJKB_02416 0.55 +0.6 2,530,051 + OHPLBJKB_02416 0.58 +0.5 2,530,051 + OHPLBJKB_02416 0.58 -0.6 2,530,051 + OHPLBJKB_02416 0.58 +1.5 2,530,053 + OHPLBJKB_02416 0.58 -0.2 2,530,054 - OHPLBJKB_02416 0.58 +1.6 2,530,054 - OHPLBJKB_02416 0.58 -0.8 2,530,054 - OHPLBJKB_02416 0.58 +0.2 2,530,075 - OHPLBJKB_02416 0.60 -0.3 2,530,093 - OHPLBJKB_02416 0.60 +0.2 2,530,113 + OHPLBJKB_02416 0.62 -1.1 2,530,191 + OHPLBJKB_02416 0.66 -1.2 2,530,353 - OHPLBJKB_02416 0.74 +0.1 2,530,354 + OHPLBJKB_02416 0.74 +0.5 2,530,354 + OHPLBJKB_02416 0.74 -1.8 2,530,355 - OHPLBJKB_02416 0.74 +0.8 2,530,459 + OHPLBJKB_02416 0.80 +0.1 2,530,502 + OHPLBJKB_02416 0.82 +0.5 2,530,571 + OHPLBJKB_02416 0.86 -1.9 2,530,571 + OHPLBJKB_02416 0.86 -1.5 2,530,572 - OHPLBJKB_02416 0.86 +0.8 2,530,572 - OHPLBJKB_02416 0.86 +1.2 2,530,572 - OHPLBJKB_02416 0.86 -0.3 2,530,576 + OHPLBJKB_02416 0.86 -1.2 2,530,577 - OHPLBJKB_02416 0.86 +0.8 2,530,577 - OHPLBJKB_02416 0.86 -2.4 2,530,623 + OHPLBJKB_02416 0.88 -1.3 2,530,634 - OHPLBJKB_02416 0.89 +0.4 2,530,646 + OHPLBJKB_02416 0.90 -0.4 2,530,750 + +1.2 2,530,807 - -1.5 2,530,871 - +1.4 2,530,872 + -1.3 2,530,873 - +4.3 2,530,873 - +0.7 2,530,873 - +2.0 2,530,873 - -1.5 2,530,873 - +0.3 2,530,893 + -1.1 2,530,894 - -2.1 2,530,894 - +7.0 2,530,920 - -0.5 2,530,937 + OHPLBJKB_02417 0.11 +1.2 2,530,987 - OHPLBJKB_02417 0.19 -0.4 2,531,130 - OHPLBJKB_02417 0.42 -0.2 2,531,199 - OHPLBJKB_02417 0.53 +1.4 2,531,199 - OHPLBJKB_02417 0.53 +2.1 2,531,199 - OHPLBJKB_02417 0.53 +0.5 2,531,199 - OHPLBJKB_02417 0.53 +1.1 2,531,199 - OHPLBJKB_02417 0.53 -0.2 2,531,200 + OHPLBJKB_02417 0.53 +0.5 2,531,200 + OHPLBJKB_02417 0.53 +0.7 2,531,200 + OHPLBJKB_02417 0.53 -1.3 2,531,200 + OHPLBJKB_02417 0.53 -0.2 2,531,200 + OHPLBJKB_02417 0.53 +1.8 2,531,201 - OHPLBJKB_02417 0.53 +1.2 2,531,201 - OHPLBJKB_02417 0.53 -0.6 2,531,201 - OHPLBJKB_02417 0.53 +1.4 2,531,201 - OHPLBJKB_02417 0.53 +0.3 2,531,201 - OHPLBJKB_02417 0.53 -0.8 2,531,258 - OHPLBJKB_02417 0.63 +0.1 2,531,325 - OHPLBJKB_02417 0.73 -0.4 2,531,333 + OHPLBJKB_02417 0.75 +0.1 2,531,333 + OHPLBJKB_02417 0.75 +0.8 2,531,334 - OHPLBJKB_02417 0.75 +0.9 2,531,364 - OHPLBJKB_02417 0.80 +1.3 2,531,414 + OHPLBJKB_02417 0.88 -1.7 2,531,474 - -0.3 2,531,474 - -0.4 2,531,489 + +3.1 2,531,489 + -1.2 2,531,490 - -0.7 2,531,624 + OHPLBJKB_02418 0.16 -0.3 2,531,625 - OHPLBJKB_02418 0.16 -2.1 2,531,659 + OHPLBJKB_02418 0.20 +2.4 2,531,750 - OHPLBJKB_02418 0.30 +0.2 2,531,755 + OHPLBJKB_02418 0.30 +1.2 2,531,780 + OHPLBJKB_02418 0.33 +0.9 2,531,780 + OHPLBJKB_02418 0.33 -2.1 2,531,780 + OHPLBJKB_02418 0.33 +1.0 2,531,781 - OHPLBJKB_02418 0.33 -2.0 2,531,828 + OHPLBJKB_02418 0.39 -1.9 2,531,828 + OHPLBJKB_02418 0.39 -0.5 2,531,828 + OHPLBJKB_02418 0.39 -1.7 2,531,828 + OHPLBJKB_02418 0.39 -1.0 2,531,833 + OHPLBJKB_02418 0.39 +1.7 2,531,999 + OHPLBJKB_02418 0.58 -0.9 2,531,999 + OHPLBJKB_02418 0.58 +0.8 2,532,095 - OHPLBJKB_02418 0.69 -2.5 2,532,097 + OHPLBJKB_02418 0.69 -1.4 2,532,098 - OHPLBJKB_02418 0.69 -0.9 2,532,118 + OHPLBJKB_02418 0.72 +0.9 2,532,167 - OHPLBJKB_02418 0.77 +0.6 2,532,339 + +2.4 2,532,351 + +0.6 2,532,352 - -2.2 2,532,427 - -0.3
Or see this region's nucleotide sequence